Hg_chrom8_TN10mRNA_16309
Organism: Heterodera glycines Gene Locus: chr8:8062405-8070326 Feature type: polypeptideProtein Sequence
Length: 1,042
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.993 | 0.625 | 0.872 | 0.596 | 0.896 | 3.027 | 0.628 | 0.96 | 0.746 | 1.167 | 0.451 | 1.863 | 1.626 | 1.901 | 1.077 | 0.713 | 0.787 | 0.858 | 0.443 | 0.79 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15410
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.635
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRLWHWANLGRERRLKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.373
|
0.092
|
0.022
|
0.616
|
0.397
|
0.269
|
0.152
|
0.033
|
0.098
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004840
|
1.000
|
2.000
|
Hsc_gene_23238.t1;Hsc_gene_23238.t2
|
Hsc_gene_23238.t1;Hsc_gene_23238.t2
|
— |
P53992.3 Protein transport protein Sec24C [Homo sapiens]
|
KAI1715425.1 sec23/Sec24 trunk domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006886|GO:0006888|GO:0008270|GO:0030127
|
GO:0008150_0.974|GO:0009987_0.886|GO:0005575_0.851|GO:0110165_0.850|GO:0005622_0.778|GO:0016020_0.755|GO:0051179_0.743|GO:0006810_0.718|GO:0051234_0.718|GO:0071944_0.712|GO:0005886_0.692|GO:0043226_0.679|GO:0051641_0.666|GO:0005737_0.652|GO:0043229_0.651|GO:0016043_0.621|GO:0071840_0.621|GO:0043227_0.616|GO:0043231_0.610|GO:0051649_0.586|GO:0003674_0.578|GO:0046907_0.569|GO:0005488_0.546|GO:0006996_0.517
|
IPR006895+311-349+|IPR006896+388-632+|IPR006900+733-830+|IPR007123+911-975+|IPR012990+638-722+|IPR029006+839-1017+|IPR036174+298-384+|IPR036175+733-838+|IPR036180+909-1038+|IPR036465+388-636_390-635+|IPR050550+22-1039+
|
— |
PF00626+911-975+Gelsolin_repeat|PF04810+311-349+Sec23/Sec24_zinc_finger|PF04811+388-632+Sec23/Sec24_trunk_domain|PF04815+733-830+Sec23/Sec24_helical_domain|PF08033+638-722+Sec23/Sec24_beta-sandwich_domain
|
— |
PTHR13803+22-1039+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-272
|
1.000
|
273-1042
|
3eh2_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.588
|
117158.220
|
5.641
|
-10.000
|
20.345
|
11.036
|
44.626
|
55.374
|
10.173
|
10.173
|
48.369
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
brown
|
1985.521
|
3750.862
|
1464.443
|
2106.101
|
2646.762
|
3246.225
|
3324.359
|
1431.046
|
1846.723
|
562.938
|
1113.131
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.585
|
-0.970
|
0.632
|
0.298
|
0.309
|
— |
-1.286
|
1.358
|
— | — |
2.709
|
— | — |
No JSON data available for plots.