Hg_chrom8_TN10mRNA_16310
Organism: Heterodera glycines Gene Locus: chr8:8071482-8083457 Feature type: polypeptideProtein Sequence
Length: 1,448
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.835 | 1.012 | 1.281 | 0.262 | 1.542 | 1.788 | 0.707 | 1.209 | 0.921 | 1.372 | 1.151 | 1.503 | 0.518 | 0.916 | 1.635 | 0.631 | 0.77 | 0.659 | 0.691 | 0.772 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15411
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKR,RRRK,RRRR,KKRKR,RGRKRKK,RRRAEAMECRRKPRL,RRLHKVLRPFLLRRLKKE,KRDTTLETALNPYAYKRVK,RKAVQTYHANHEKDRKKEE,RKRKKALPPEEEVLPKKRE,KRKKALPPEEEVLPKKRET,RKKALPPEEEVLPKKRETR,PKGRRGPGGGPGKRQRVTK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.925
|
0.045
|
0.045
|
0.200
|
0.040
|
0.016
|
0.020
|
0.002
|
0.092
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000933
|
3.000
|
3.000
|
Hsc_gene_23239.t1;Hsc_gene_23239.t2;Hsc_gene_23239.t3
|
Hsc_gene_23239.t1;Hsc_gene_23239.t2;Hsc_gene_23239.t3
|
— |
G5EF53.1 SWI/SNF chromatin remodeling complex core catalytic subunit swsn-4 [Caenorhabditis elegans]
|
KAH7724114.1 ATP-dependent helicase brm [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005524|GO:0005634|GO:0006355|GO:0042393|GO:0140658
|
GO:0008150_0.945|GO:0005575_0.842|GO:0110165_0.839|GO:0009987_0.835|GO:0065007_0.788|GO:0005622_0.784|GO:0050789_0.771|GO:0016020_0.764|GO:0043226_0.745|GO:0050794_0.733|GO:0043229_0.726|GO:0003674_0.712|GO:0005488_0.708|GO:0071840_0.675|GO:0016043_0.669|GO:0043227_0.647|GO:0043231_0.613|GO:0032502_0.594|GO:0005634_0.579|GO:0043228_0.571|GO:0043232_0.571|GO:0048856_0.570|GO:0008152_0.556|GO:0043170_0.556|GO:0019222_0.537|GO:0006325_0.535|GO:0006338_0.535|GO:0009058_0.531|GO:0009059_0.531|GO:0010467_0.531|GO:0044237_0.531|GO:0044249_0.531|GO:0031323_0.525|GO:0032991_0.522|GO:0060255_0.521|GO:0044238_0.520|GO:0009889_0.502|GO:0031326_0.502
|
IPR000330+524-809+|IPR001487+1142-1381_1292-1362_1294-1365_1295-1308_1309-1325_1325-1343_1343-1362+|IPR001650+838-951_841-992_867-951+|IPR006576+373-417_375-415+|IPR014001+517-709_533-698+|IPR014012+221-293_222-291+|IPR014978+36-71_39-66+|IPR018359+1297-1354+|IPR027417+475-746_748-1048_756-982+|IPR029295+1045-1124+|IPR036427+1259-1376_1264-1379+|IPR037259+373-421_376-442+|IPR038718+520-755+|IPR049730+830-962+
|
SM00297+1142-1381+|SM00487+517-709+|SM00490+867-951+|SM00573+221-293+|SM00592+373-417+|SM01314+1045-1124+
|
PF00176+524-809+SNF2-related_domain|PF00271+838-951+Helicase_conserved_C-terminal_domain|PF00439+1294-1365+Bromodomain|PF07529+222-291+HSA_domain|PF07533+375-415+BRK_domain|PF08880+39-66+QLQ
|
G3DSA:1.20.5.170:FF:000008+224-299+probable_global_transcription_activator_SNF2L2_isoform_X1|G3DSA:3.40.50.10810:FF:000008+490-755+Chromatin_structure-remodeling_complex_subunit_snf21|G3DSA:3.40.50.300:FF:003020+752-1050+SNF2-related_domain-containing_protein
|
PTHR10799+432-1163+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-87;200-245;319-515;1041-1448
|
3.000
|
88-199;246-318;516-1040
|
9ayq_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.548
|
165906.200
|
6.888
|
7.500
|
34.323
|
7.804
|
54.765
|
45.235
|
18.025
|
16.298
|
43.508
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
4145.117
|
6419.239
|
4203.319
|
3709.188
|
3841.735
|
3667.414
|
3677.247
|
2434.288
|
4478.102
|
4294.146
|
4372.984
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.840
|
-0.928
|
— | — | — | — |
-0.697
|
0.738
|
— | — | — | — | — |
No JSON data available for plots.