Hg_chrom8_TN10mRNA_16313
Organism: Heterodera glycines Gene Locus: chr8:8098515-8107672 Feature type: polypeptideProtein Sequence
Length: 1,339
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.19 | 1.146 | 0.91 | 0.695 | 0.709 | 1.992 | 0.818 | 1.867 | 0.763 | 1.151 | 0.543 | 1.318 | 0.788 | 1.005 | 1.189 | 1.483 | 0.955 | 0.69 | 0.517 | 0.615 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15414
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKKR,RKQRSAQKTYDKKSEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.226
|
0.179
|
0.018
|
0.689
|
0.176
|
0.281
|
0.221
|
0.047
|
0.507
|
0.104
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001636
|
3.000
|
1.000
|
Hsc_gene_23249.t1
|
— | — |
Q7Z6B7.1 SLIT-ROBO Rho GTPase-activating protein 1 [Homo sapiens]
|
KAI1724883.1 rhoGAP domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007165
|
GO:0005575_0.865|GO:0110165_0.859|GO:0008150_0.828|GO:0009987_0.791|GO:0065007_0.707|GO:0050789_0.698|GO:0050794_0.693|GO:0005622_0.670|GO:0003674_0.634|GO:0005488_0.604|GO:0005515_0.555|GO:0016020_0.545
|
IPR000198+590-778_601-775_604-751+|IPR001060+29-109+|IPR008936+567-782_584-778+|IPR027267+22-315_24-308+|IPR031160+20-295+|IPR051627+8-467+
|
SM00324+601-775+
|
PF00611+29-109+Fes/CIP4,_and_EFC/F-BAR_homology_domain|PF00620+604-751+RhoGAP_domain
|
— |
PTHR14166+8-467+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;435-582;788-1339
|
2.000
|
4-434;583-787
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.846
|
145622.500
|
7.736
|
27.000
|
22.405
|
9.335
|
51.307
|
48.693
|
13.144
|
9.261
|
55.041
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1411.168
|
2483.778
|
1696.840
|
1345.766
|
1477.350
|
1390.022
|
2017.475
|
1418.712
|
934.040
|
1037.103
|
992.933
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.778
|
-1.021
|
-0.226
|
— | — |
0.547
|
— |
0.650
|
— | — | — | — | — |
No JSON data available for plots.