Hg_chrom8_TN10mRNA_16315
Organism: Heterodera glycines Gene Locus: chr8:8114243-8115589 Feature type: polypeptideProtein Sequence
Length: 289
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.644 | 0.966 | 1.384 | 0.716 | 0.692 | 0.621 | 0.906 | 1.73 | 1.23 | 1.356 | 0.682 | 1.221 | 0.769 | 0.732 | 1.342 | 1.384 | 0.851 | 1.258 | 0.799 | 1.018 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15416
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — |
25-46
|
0.934
|
— | — | — | — |
0.000
|
— | — |
0.483
|
0.390
|
0.219
|
0.617
|
0.268
|
0.100
|
0.133
|
0.151
|
0.055
|
0.087
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012328
|
1.000
|
1.000
|
Hsc_gene_23251.t1
|
— | — |
Q1RGP0.1 ATP-dependent zinc metalloprotease FtsH [Rickettsia bellii RML369-C]
|
NNF77661.1 ATP-dependent zinc metalloprotease FtsH [Hyphomicrobiales bacterium]
|
MCL1903904
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004222|GO:0005524|GO:0006508
|
GO:0008150_0.939|GO:0005575_0.862|GO:0110165_0.862|GO:0008152_0.797|GO:0044238_0.776|GO:0005622_0.772|GO:0016020_0.764|GO:0043170_0.745|GO:0019538_0.724|GO:0043226_0.704|GO:0009987_0.690|GO:0043229_0.690|GO:0005737_0.612|GO:0043227_0.571|GO:0043231_0.556|GO:0009056_0.552|GO:0009057_0.537|GO:0030163_0.528
|
IPR000642+69-175+|IPR037219+62-221_68-173+
|
— |
PF01434+69-175+Peptidase_family_M41
|
— |
PTHR23076+7-175+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
222-289
|
1.000
|
1-221
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.749
|
32031.360
|
7.000
|
3.000
|
26.298
|
10.727
|
47.751
|
52.249
|
14.533
|
11.765
|
53.979
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
salmon
|
77.548
|
16.287
|
21.272
|
28.039
|
36.966
|
38.900
|
22.335
|
31.517
|
34.873
|
239.876
|
152.017
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.647
|
— | — | — |
-0.785
|
— | — | — | — | — | — | — |
No JSON data available for plots.