Hg_chrom8_TN10mRNA_16321
Organism: Heterodera glycines Gene Locus: chr8:8143367-8147687 Feature type: polypeptideProtein Sequence
Length: 382
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.944 | 1.096 | 0.714 | 0.451 | 0.873 | 1.208 | 0.717 | 1.309 | 0.989 | 1.132 | 0.793 | 1.232 | 0.8 | 1.208 | 1.389 | 0.972 | 1.459 | 0.952 | 0.805 | 1.232 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15422
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.862
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.481
|
0.285
|
0.025
|
0.685
|
0.080
|
0.234
|
0.147
|
0.013
|
0.111
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004843
|
2.000
|
1.000
|
Hsc_gene_23259.t1
|
Hsc_gene_23259.t1
|
— |
G5EFM9.1 Serine/threonine-protein kinase nekl-3 [Caenorhabditis elegans]
|
KAI3417815.1 Serine/threonine-protein kinase Nek6 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.844|GO:0005575_0.789|GO:0110165_0.781|GO:0009987_0.753|GO:0003674_0.751|GO:0005622_0.692|GO:0003824_0.678|GO:0016740_0.678|GO:0016772_0.656|GO:0140096_0.650|GO:0016301_0.642|GO:0065007_0.642|GO:0050789_0.631|GO:0016773_0.627|GO:0004672_0.620|GO:0050794_0.619|GO:0016020_0.522|GO:0050896_0.512|GO:0005737_0.509
|
IPR000719+97-371_100-367+|IPR001245+188-201_229-247_294-316_340-362+|IPR008271+235-247+|IPR011009+90-378+|IPR017441+101-132+|IPR050660+103-367+
|
SM00220+97-371+
|
PF00069+100-367+Protein_kinase_domain
|
— |
PTHR43671+103-367+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-87
|
1.000
|
88-382
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.880
|
42694.530
|
9.631
|
16.000
|
23.822
|
10.733
|
48.953
|
51.047
|
14.660
|
9.162
|
52.356
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
220.185
|
15.445
|
43.195
|
58.975
|
137.523
|
152.449
|
941.894
|
31.296
|
0.000
|
445.519
|
254.582
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.250
|
1.794
|
0.560
|
1.189
|
— |
2.638
|
-2.396
|
5.056
|
-9.622
|
6.739
|
— | — | — |
No JSON data available for plots.