Hg_chrom8_TN10mRNA_16322
Organism: Heterodera glycines Gene Locus: chr8:8161838-8163295 Feature type: polypeptideProtein Sequence
Length: 119
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.391 | 0.586 | 1.222 | 1.449 | 1.961 | 1.077 | 0.5 | 2.521 | 2.054 | 1.136 | 1.528 | 1.977 | 0.934 | 1.131 | 0.857 | 0.48 | 0.276 | 0.637 | 2.586 | 0.247 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15423
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.285
|
0.387
|
0.074
|
0.251
|
0.347
|
0.162
|
0.258
|
0.021
|
0.367
|
0.806
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002522
|
2.000
|
2.000
|
Hsc_gene_23270.t1;Hsc_gene_23270.t2
|
Hsc_gene_23270.t1;Hsc_gene_23270.t2
|
— |
P34714.1 SPARC [Caenorhabditis elegans]
|
AVA09652.1 putative effector protein [Heterodera avenae];AVA09691.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005615
|
GO:0005575_0.876|GO:0110165_0.869|GO:0008150_0.724|GO:0009987_0.659|GO:0003674_0.635|GO:0005488_0.611|GO:0065007_0.530|GO:0050789_0.521
|
IPR001999+4-14+|IPR011992+1-119+|IPR018247+92-104+|IPR019577+1-107+
|
— |
PF10591+1-107+Secreted_protein_acidic_and_rich_in_cysteine_Ca_binding_region
|
G3DSA:1.10.238.10:FF:000234+1-119+Protein_BM-40
|
PTHR13866+2-108+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-119
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.799
|
14080.300
|
5.920
|
-2.000
|
37.815
|
12.605
|
49.580
|
50.420
|
19.328
|
18.487
|
36.134
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1708.709
|
333.845
|
294.885
|
1162.949
|
1792.549
|
3460.505
|
1817.142
|
1389.720
|
145.131
|
3522.405
|
2075.002
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.407
|
1.664
|
2.088
|
0.592
|
0.964
|
-0.917
|
-1.427
|
0.533
|
— | — | — | — | — |
No JSON data available for plots.