SCN Proteipedia

Hg_chrom8_TN10mRNA_16323

Organism: Heterodera glycines Gene Locus: chr8:8167236-8170965 Feature type: polypeptide

Protein Sequence

Length: 234

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.795	0.596	0.699	1.179	0.997	1.534	0.56	1.709	1.33	1.271	0.389	0.754	0.831	1.315	1.919	1.465	0.771	0.971	1.315	0.503	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15424	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	9-Not_Clustered	0.811

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	RRRR	—	—	—	—	—	—	0.000	—	—	0.469	0.468	0.014	0.542	0.272	0.024	0.255	0.129	0.144	0.441

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	—	—	—	—	Hsc_gene_23272.t1	F01G4.1	G5EF53.1 SWI/SNF chromatin remodeling complex core catalytic subunit swsn-4 [Caenorhabditis elegans]	KHJ94915.1 protein, SNF2 family [Oesophagostomum dentatum]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.947\|GO:0005575_0.862\|GO:0110165_0.847\|GO:0065007_0.818\|GO:0009987_0.816\|GO:0050789_0.805\|GO:0016020_0.800\|GO:0050794_0.791\|GO:0005622_0.760\|GO:0043226_0.729\|GO:0043229_0.726\|GO:0043227_0.698\|GO:0043231_0.698\|GO:0016043_0.661\|GO:0071840_0.661\|GO:0003674_0.656\|GO:0032502_0.615\|GO:0005488_0.604\|GO:0008152_0.598\|GO:0043170_0.598\|GO:0009058_0.586\|GO:0044237_0.586\|GO:0044249_0.586\|GO:0019222_0.582\|GO:0031323_0.582\|GO:0006325_0.581\|GO:0006338_0.581\|GO:0044238_0.581\|GO:0009059_0.579\|GO:0032991_0.579\|GO:0060255_0.575\|GO:0010467_0.572\|GO:0080090_0.568\|GO:0006139_0.557\|GO:0005634_0.554\|GO:0009889_0.552\|GO:0031326_0.552\|GO:0010468_0.550\|GO:0010556_0.550\|GO:0034654_0.550\|GO:0048856_0.548\|GO:0090304_0.544\|GO:0016070_0.541\|GO:0141187_0.541\|GO:0032774_0.540\|GO:0006351_0.530\|GO:0019219_0.530\|GO:0043228_0.529\|GO:0051252_0.529\|GO:0006355_0.526\|GO:0043232_0.526\|GO:2001141_0.526\|GO:0048519_0.521\|GO:0032501_0.507\|GO:0048523_0.506	—	—	—	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	47-111	2.000	1-46;112-234	7y8r_I	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.862	26370.120	8.508	9.000	25.214	9.829	48.718	51.282	15.385	9.829	49.573

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	blue	861.716	4.686	39.522	13.974	15.191	13.906	17.163	30.694	4.112	3716.247	2125.332

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.850	1.441	-1.391	—	—	—	1.036	-0.692	-7.983	—	-7.345	—	—

No JSON data available for plots.

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