Hg_chrom8_TN10mRNA_16330
Organism: Heterodera glycines Gene Locus: chr8:8186521-8189024 Feature type: polypeptideProtein Sequence
Length: 612
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.703 | 1.406 | 0.713 | 0.732 | 1.144 | 1.131 | 0.447 | 1.552 | 1.089 | 1.281 | 1.213 | 1.346 | 2.042 | 0.691 | 1.0 | 1.214 | 0.857 | 0.792 | 1.257 | 0.769 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15430
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRSR
|
3-23
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.738
|
0.209
|
0.034
|
0.282
|
0.190
|
0.085
|
0.048
|
0.038
|
0.088
|
0.248
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001781
|
2.000
|
2.000
|
Hsc_gene_1692.t1;Hsc_gene_5089.t1
|
Hsc_gene_1692.t1;Hsc_gene_5089.t1
|
— | — |
CAK5126805.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0008150_0.947|GO:0009987_0.886|GO:0003674_0.859|GO:0065007_0.830|GO:0050789_0.807|GO:0005488_0.763|GO:0071840_0.754|GO:0032502_0.749|GO:0048856_0.749|GO:0016043_0.739|GO:0006996_0.702|GO:0097159_0.693|GO:0009653_0.688|GO:0050793_0.688|GO:0007010_0.680|GO:0003676_0.679|GO:0000902_0.677|GO:0022603_0.675|GO:0022604_0.673|GO:0003677_0.662
|
IPR008906+526-576+|IPR012337+168-581+
|
— |
PF05699+526-576+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR37162+25-578+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-612
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.805
|
70701.970
|
9.026
|
22.500
|
26.797
|
14.706
|
50.980
|
49.020
|
16.013
|
10.784
|
44.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
278.566
|
13.573
|
18.658
|
18.689
|
14.230
|
8.549
|
2.019
|
7.532
|
372.372
|
908.228
|
678.575
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-2.073
|
— | — | — |
-4.218
|
-5.910
|
-5.493
|
— |
No JSON data available for plots.