SCN Proteipedia

Hg_chrom8_TN10mRNA_16334

Organism: Heterodera glycines Gene Locus: chr8:8235419-8238044 Feature type: polypeptide

Protein Sequence

Length: 255

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.459	0.638	0.57	0.811	1.111	1.307	0.887	0.98	0.349	0.583	1.07	2.537	0.218	1.056	2.401	1.008	1.35	0.654	1.508	0.346	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15434	—	—	1.111	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-Not_Clustered	0.494

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	PPAKRSK,KRHTLREARVTEKKQQK,KRDTTLETALNPYAYKRVK,KRSKIWTRSNGIGASLRRR,RRHTESKKRWSSSCRRRRS	—	—	—	—	—	—	0.000	—	—	0.557	0.246	0.009	0.333	0.122	0.056	0.398	0.013	0.125	0.513

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000933	3.000	3.000	Hsc_gene_23239.t1;Hsc_gene_23239.t2;Hsc_gene_23239.t3	—	—	G5EF53.1 SWI/SNF chromatin remodeling complex core catalytic subunit swsn-4 [Caenorhabditis elegans]	KAI1715414.1 HSA domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.923\|GO:0005575_0.791\|GO:0110165_0.784\|GO:0005622_0.718\|GO:0050789_0.712\|GO:0065007_0.712\|GO:0009987_0.709\|GO:0050794_0.694\|GO:0016020_0.692\|GO:0032502_0.685\|GO:0048856_0.685\|GO:0043226_0.667\|GO:0043229_0.662\|GO:0003674_0.604\|GO:0048519_0.602\|GO:0043227_0.599\|GO:0032501_0.595\|GO:0071840_0.594\|GO:0043231_0.593\|GO:0048523_0.593\|GO:0016043_0.585\|GO:0005488_0.584\|GO:0005634_0.573\|GO:0043228_0.569\|GO:0043232_0.569\|GO:0007275_0.566\|GO:0048731_0.555\|GO:0008152_0.532\|GO:0043170_0.532\|GO:0006325_0.531\|GO:0006338_0.530\|GO:0009058_0.526\|GO:0009059_0.526\|GO:0044237_0.526\|GO:0044249_0.526\|GO:0044238_0.525\|GO:0010467_0.524\|GO:0032991_0.522\|GO:0019222_0.514\|GO:0006139_0.513\|GO:0031323_0.513\|GO:0034654_0.513\|GO:0016070_0.509\|GO:0032774_0.509\|GO:0090304_0.509\|GO:0141187_0.509\|GO:0080090_0.504\|GO:0060255_0.503	—	—	—	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	full	1-255	0.000	—	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.499	28250.080	11.112	25.500	30.588	5.882	53.725	46.275	20.784	9.804	53.333

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	red	394.263	55.204	57.460	81.272	88.463	69.950	83.153	53.523	84.030	1478.494	880.866

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.421	0.611	—	-0.325	—	-0.492	0.779	—	—	—	—	—

No JSON data available for plots.

Back to Browser