Hg_chrom8_TN10mRNA_16336
Organism: Heterodera glycines Gene Locus: chr8:8244782-8247152 Feature type: polypeptideProtein Sequence
Length: 160
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.017 | 0.145 | 1.25 | 0.647 | 1.667 | 1.122 | 0.893 | 1.562 | 0.694 | 1.182 | 0.947 | 0.735 | 1.389 | 0.962 | 2.168 | 0.357 | 1.127 | 0.663 | 1.442 | 0.368 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15436
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRR,RRTRGRKKKLKRI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.724
|
0.152
|
0.029
|
0.376
|
0.106
|
0.121
|
0.086
|
0.005
|
0.043
|
0.217
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004188
|
2.000
|
1.000
|
Hsc_gene_9295.t1
|
— | — | — | — |
No
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004222|GO:0005524|GO:0006508
|
GO:0008150_0.907|GO:0005575_0.883|GO:0110165_0.877|GO:0009987_0.845|GO:0005622_0.821|GO:0016020_0.778|GO:0005737_0.760|GO:0043226_0.714|GO:0065007_0.714|GO:0043229_0.700|GO:0008152_0.669|GO:0043227_0.663|GO:0071840_0.653|GO:0043231_0.651|GO:0044237_0.646|GO:0016043_0.645|GO:0044238_0.636|GO:0009058_0.634|GO:0050789_0.633|GO:0050794_0.622|GO:0043170_0.613|GO:0044249_0.610|GO:0009059_0.595|GO:0010467_0.589|GO:0019538_0.586|GO:0006508_0.536|GO:0005739_0.520|GO:0003674_0.508
|
IPR000642+39-114+|IPR037219+32-153_37-112+
|
— |
PF01434+39-114+Peptidase_family_M41
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-31;153-160
|
1.000
|
32-152
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.543
|
18378.780
|
7.355
|
2.500
|
36.875
|
11.250
|
51.250
|
48.750
|
20.000
|
16.875
|
44.375
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
83.822
|
5.301
|
13.364
|
23.826
|
32.257
|
37.112
|
8.404
|
14.685
|
32.563
|
291.693
|
180.637
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.110
|
2.034
|
0.939
|
— | — |
-2.135
|
-1.437
|
— | — | — | — | — | — |
No JSON data available for plots.