Hg_chrom8_TN10mRNA_16337
Organism: Heterodera glycines Gene Locus: chr8:8248121-8249646 Feature type: polypeptideProtein Sequence
Length: 313
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.632 | 1.783 | 1.336 | 0.881 | 1.012 | 0.819 | 0.532 | 1.278 | 1.775 | 1.252 | 1.162 | 1.316 | 1.242 | 1.167 | 1.174 | 0.776 | 0.995 | 0.29 | 1.72 | 0.47 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15437
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KMKPGPSGQRKKK
|
27-58
|
0.997
|
4-43
|
0.809
|
— | — |
0.000
|
— | — |
0.636
|
0.375
|
0.023
|
0.396
|
0.119
|
0.035
|
0.091
|
0.009
|
0.128
|
0.357
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001438
|
1.000
|
4.000
|
Hsc_gene_14060.t1;Hsc_gene_16959.t1;Hsc_gene_9288.t1;Hsc_gene_9303.t1
|
— | — | — |
KAI3411195.1 hypothetical protein GPALN_003278 [Globodera pallida]
|
TAN92777
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
274-313
|
1.000
|
1-273
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.740
|
36005.040
|
7.363
|
4.000
|
29.393
|
10.863
|
51.757
|
48.243
|
15.974
|
13.419
|
46.965
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
64.898
|
5.863
|
12.838
|
28.011
|
95.266
|
65.773
|
24.005
|
60.358
|
0.000
|
174.386
|
99.649
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.124
|
1.238
|
1.738
|
-0.522
|
-1.445
|
— |
-1.188
|
— |
5.665
|
— | — | — |
No JSON data available for plots.