Hg_chrom8_TN10mRNA_16338
Organism: Heterodera glycines Gene Locus: chr8:8251970-8254254 Feature type: polypeptideProtein Sequence
Length: 379
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.644 | 1.718 | 0.72 | 0.91 | 0.484 | 1.218 | 0.44 | 0.66 | 1.759 | 1.462 | 1.279 | 1.086 | 1.612 | 0.964 | 1.723 | 0.792 | 0.908 | 0.68 | 2.03 | 0.388 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15438
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRSLRVAKKK
|
8-30
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.750
|
0.124
|
0.012
|
0.303
|
0.040
|
0.017
|
0.020
|
0.010
|
0.190
|
0.136
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000622
|
2.000
|
5.000
|
Hsc_gene_15141.t1;Hsc_gene_23087.t1;Hsc_gene_23520.t1;Hsc_gene_9051.t1;Hsc_gene_9304.t1
|
Hsc_gene_16961.t1;Hsc_gene_17797.t1
|
— | — |
KAI3422151.1 hypothetical protein GPALN_012684 [Globodera pallida]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
370-379
|
1.000
|
1-369
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.609
|
44124.800
|
11.097
|
40.500
|
25.066
|
11.082
|
48.285
|
51.715
|
18.206
|
6.860
|
43.799
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
47.867
|
13.709
|
17.833
|
35.361
|
38.258
|
18.931
|
53.922
|
25.884
|
0.000
|
132.954
|
75.974
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.231
|
1.104
|
— |
-1.001
|
1.518
|
— |
1.199
|
— |
6.001
|
— | — | — |
No JSON data available for plots.