SCN Proteipedia

Hg_chrom8_TN10mRNA_16340

Organism: Heterodera glycines Gene Locus: chr8:8263516-8266502 Feature type: polypeptide

Protein Sequence

Length: 268

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.911	1.215	1.221	0.515	0.871	1.339	0.666	1.493	0.498	1.563	0.848	0.878	0.726	1.292	2.361	0.959	0.734	0.452	0.287	0.988	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15440	—	—	1.333	1.000	2.000	1.000	2.000	1.000	1.000	2.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKGLLIDSKHEGAHRRRYL	—	—	—	—	—	—	0.000	—	—	0.692	0.094	0.044	0.309	0.083	0.012	0.025	0.081	0.064	0.126

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	—	—	—	—	—	—	G5EF53.1 SWI/SNF chromatin remodeling complex core catalytic subunit swsn-4 [Caenorhabditis elegans]	KAF1399067.1 Transcription activator BRG1, partial [Spheniscus magellanicus];KAF1419419.1 Transcription activator BRG1, partial [Spheniscus humboldti];KAF1453530.1 Transcription activator BRG1, partial [Spheniscus mendiculus];KAF1466198.1 Transcription activator BRG1, partial [Pygoscelis antarcticus];KAF1471597.1 Transcription activator BRG1, partial [Eudyptula novaehollandiae];KAF1525878.1 Transcription activator BRG1, partial [Eudyptula albosignata];KAF1527414.1 Transcription activator BRG1, partial [Eudyptes sclateri];KAF1545072.1 Transcription activator BRG1, partial [Eudyptula minor];KAF1562370.1 Transcription activator BRG1, partial [Eudyptes schlegeli];KAF1571281.1 Transcription activator BRG1, partial [Eudyptes robustus];KAF1587599.1 Transcription activator BRG1, partial [Eudyptes moseleyi];KAF1607353.1 Transcription activator BRG1, partial [Eudyptes chrysolophus];KAF1613543.1 Transcription activator BRG1, partial [Eudyptes pachyrhynchus];KAF1631436.1 Transcription activator BRG1, partial [Eudyptes filholi];KAF1646456.1 Transcription activator BRG1, partial [Eudyptes chrysocome];KAF1675208.1 Transcription activator BRG1, partial [Pygoscelis papua];NWH48021.1 SMCA4 protein [Fregata magnificens];NWI24903.1 SMCA4 protein [Sula dactylatra];NWI64834.1 SMCA4 protein [Todus mexicanus];NWI86376.1 SMCA4 protein [Pitta sordida];NWQ84563.1 SMCA4 protein [Columbina picui];NWQ91598.1 SMCA4 protein [Burhinus bistriatus];NWS24469.1 SMCA4 protein [Polioptila caerulea];NWS64718.1 SMCA4 protein [Chunga burmeisteri];NWU88580.1 SMCA4 protein [Upupa epops];NWW71049.1 SMCA4 protein [Climacteris rufus];NWX93945.1 SMCA4 protein [Nothoprocta pentlandii];NWY07968.1 SMCA4 protein [Nothoprocta ornata];NWY63704.1 SMCA4 protein [Erithacus rubecula];NWZ30399.1 SMCA4 protein [Asarcornis scutulata];NWZ60248.1 SMCA4 protein [Haliaeetus albicilla];NXA18437.1 SMCA4 protein [Ibidorhyncha struthersii];NXA57235.1 SMCA4 protein [Nothocercus julius];NXA71317.1 SMCA4 protein [Thryothorus ludovicianus];NXC77491.1 SMCA4 protein [Anhinga anhinga];NXD18365.1 SMCA4 protein [Nothocercus nigrocapillus];NXE57560.1 SMCA4 protein [Casuarius casuarius];NXE85479.1 SMCA4 protein [Cochlearius cochlearius];NXF28113.1 SMCA4 protein [Rhodinocichla rosea];NXF41955.1 SMCA4 protein [Nyctibius bracteatus];NXF55884.1 SMCA4 protein [Oceanites oceanicus];NXF64854.1 SMCA4 protein [Ciccaba nigrolineata];NXF82417.1 SMCA4 protein [Sclerurus mexicanus];NXF96750.1 SMCA4 protein [Eubucco bourcierii];NXG39801.1 SMCA4 protein [Dromaius novaehollandiae];NXG67647.1 SMCA4 protein [Hemiprocne comata];NXG74419.1 SMCA4 protein [Baryphthengus martii];NXH39298.1 SMCA4 protein [Dicaeum eximium];NXH76491.1 SMCA4 protein [Oceanodroma tethys];NXI66460.1 SMCA4 protein [Anseranas semipalmata];NXJ41719.1 SMCA4 protein [Ciconia maguari];NXJ58276.1 SMCA4 protein [Spizaetus tyrannus];NXK01080.1 SMCA4 protein [Corythaixoides concolor];NXK15343.1 SMCA4 protein [Herpetotheres cachinnans];NXL40421.1 SMCA4 protein [Glaucidium brasilianum];NXL86939.1 SMCA4 protein [Alectura lathami];NXM73684.1 SMCA4 protein [Serilophus lunatus];NXN07063.1 SMCA4 protein [Indicator maculatus];NXN52675.1 SMCA4 protein [Rynchops niger];NXN73189.1 SMCA4 protein [Himantopus himantopus];NXO53055.1 SMCA4 protein [Aramus guarauna];NXO66800.1 SMCA4 protein [Phainopepla nitens];NXS47222.1 SMCA4 protein [Balaeniceps rex];NXS59486.1 SMCA4 protein [Brachypteracias leptosomus];NXS72409.1 SMCA4 protein [Pandion haliaetus];NXT32723.1 SMCA4 protein [Pelecanoides urinatrix];NXT78799.1 SMCA4 protein [Zapornia atra];NXT86504.1 SMCA4 protein [Anhinga rufa];NXU28243.1 SMCA4 protein [Thalassarche chlororhynchos];NXV37951.1 SMCA4 protein [Rissa tridactyla];NXV93267.1 SMCA4 protein [Calonectris borealis];NXW11400.1 SMCA4 protein [Fregetta grallaria];NXW25844.1 SMCA4 protein [Circaetus pectoralis];NXW53172.1 SMCA4 protein [Eurystomus gularis];NXW84761.1 SMCA4 protein [Alopecoenas beccarii];NXX06102.1 SMCA4 protein [Larus smithsonianus];NXX56080.1 SMCA4 protein [Scopus umbretta];NXX76315.1 SMCA4 protein [Urocolius indicus];NXX98875.1 SMCA4 protein [Centropus bengalensis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.864\|GO:0005575_0.799\|GO:0110165_0.790\|GO:0009987_0.758\|GO:0005622_0.740\|GO:0043226_0.678\|GO:0016020_0.671\|GO:0043229_0.664\|GO:0065007_0.654\|GO:0050789_0.642\|GO:0050794_0.627\|GO:0003674_0.622\|GO:0043227_0.608\|GO:0043231_0.604\|GO:0005488_0.586\|GO:0005634_0.539\|GO:0008152_0.521\|GO:0009058_0.521\|GO:0043170_0.521\|GO:0032502_0.516\|GO:0044237_0.512\|GO:0044249_0.510\|GO:0009059_0.508\|GO:0010467_0.503	IPR001650+140-181+\|IPR027417+129-182_133-181+\|IPR049730+139-181+	—	PF00271+140-181+Helicase_conserved_C-terminal_domain	—	PTHR10799+134-181+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-214	1.000	215-268	7vdv_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.799	30629.580	10.279	18.000	32.090	9.328	53.731	46.269	20.149	11.940	47.761

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	193.643	495.392	256.680	241.568	228.587	185.561	179.275	246.687	139.538	54.877	91.160

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.179	-1.173	—	—	-0.286	—	0.307	-0.320	—	—	4.125	—	—

No JSON data available for plots.

Back to Browser