Hg_chrom8_TN10mRNA_16341
Organism: Heterodera glycines Gene Locus: chr8:8267662-8270362 Feature type: polypeptideProtein Sequence
Length: 389
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.837 | 1.734 | 0.795 | 1.064 | 0.728 | 0.989 | 0.581 | 1.542 | 1.485 | 1.146 | 0.818 | 1.21 | 1.642 | 0.791 | 1.207 | 1.175 | 1.011 | 0.818 | 0.593 | 0.756 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15441
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.875
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.392
|
0.106
|
0.009
|
0.724
|
0.099
|
0.229
|
0.136
|
0.037
|
0.209
|
0.223
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
KAI1724872.1 dcp1-like decapping family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000290|GO:0008047|GO:0043085
|
GO:0005575_0.882|GO:0110165_0.880|GO:0005622_0.824|GO:0043226_0.762|GO:0008150_0.758|GO:0043229_0.758|GO:0005737_0.739|GO:0009987_0.579|GO:0043228_0.517|GO:0043232_0.516
|
IPR010334+10-178_13-120+|IPR011993+3-130+|IPR013320+216-380+|IPR043136+203-386+
|
— |
PF06058+13-120+Dcp1-like_decapping_family
|
— |
PTHR16290+10-178+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
148-194
|
2.000
|
1-147;195-389
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.885
|
43792.060
|
8.854
|
16.000
|
23.136
|
12.339
|
48.843
|
51.157
|
14.396
|
8.740
|
50.900
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
brown
|
81.409
|
84.429
|
137.582
|
130.915
|
145.950
|
102.688
|
53.017
|
75.629
|
77.025
|
24.568
|
47.050
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.475
|
0.496
|
— | — |
-0.493
|
-0.946
|
-0.541
|
— | — | — | — | — | — |
No JSON data available for plots.