SCN Proteipedia

Hg_chrom8_TN10mRNA_16343

Organism: Heterodera glycines Gene Locus: chr8:8281930-8290337 Feature type: polypeptide

Protein Sequence

Length: 794

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.23	1.054	0.847	0.782	1.175	1.486	0.93	0.693	1.036	1.311	0.458	1.259	1.469	0.63	1.337	0.954	0.785	1.164	0.581	0.407	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15443	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.961

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	14-34	0.998	—	—	—	—	0.000	—	—	0.395	0.077	0.015	0.625	0.116	0.304	0.321	0.033	0.162	0.100

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002524	2.000	2.000	Hsc_gene_23269.t1;Hsc_gene_23269.t2	Hsc_gene_23269.t2	—	Q99MH9.1 Bardet-Biedl syndrome 2 protein homolog [Rattus norvegicus]	KAI1715409.1 ciliary BBSome complex subunit 2, middle region domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0034464\|GO:1905515	GO:0008150_0.957\|GO:0005575_0.912\|GO:0110165_0.912\|GO:0009987_0.902\|GO:0016020_0.821\|GO:0071944_0.806\|GO:0005622_0.796\|GO:0005886_0.790\|GO:0051179_0.785\|GO:0006810_0.781\|GO:0051234_0.781\|GO:0043226_0.737\|GO:0051641_0.709\|GO:0043227_0.694\|GO:0033036_0.692\|GO:0008104_0.690\|GO:0070727_0.690\|GO:0016192_0.686\|GO:0048193_0.675\|GO:0032991_0.619\|GO:0098590_0.605\|GO:0043229_0.603\|GO:0032501_0.596\|GO:0042995_0.593\|GO:0120025_0.589\|GO:0071840_0.586\|GO:0016043_0.580\|GO:0030990_0.552\|GO:0005929_0.551\|GO:0006996_0.527\|GO:0044085_0.525\|GO:0030030_0.520\|GO:0051649_0.520\|GO:0120036_0.520\|GO:0022607_0.518\|GO:0046907_0.511\|GO:0007010_0.510\|GO:0007017_0.505\|GO:0030031_0.504\|GO:0033365_0.504\|GO:0051640_0.504\|GO:0051656_0.504\|GO:0070925_0.504\|GO:0120031_0.504\|GO:0007018_0.503\|GO:0000226_0.502\|GO:0051648_0.502\|GO:0051650_0.502	IPR016616+439-793+\|IPR029333+392-790+\|IPR029429+163-264+\|IPR029430+61-121+\|IPR036322+42-271+	—	PF14781+61-121+Ciliary_BBSome_complex_subunit_2,_N-terminal\|PF14782+392-790+Ciliary_BBSome_complex_subunit_2,_C-terminal\|PF14783+163-264+Ciliary_BBSome_complex_subunit_2,_middle_region	—	PTHR32465+439-793+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-794	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.550	86832.670	5.156	-11.500	22.670	8.816	44.458	55.542	10.957	11.713	52.267

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	389.227	285.280	328.547	145.425	45.739	50.160	25.024	59.879	17.190	1337.456	771.628

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-1.109	-1.066	-1.704	—	-0.995	—	-1.118	—	—	—	—	—

No JSON data available for plots.

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