SCN Proteipedia

Hg_chrom8_TN10mRNA_16345

Organism: Heterodera glycines Gene Locus: chr8:8299121-8318894 Feature type: polypeptide

Protein Sequence

Length: 1,817

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.517	0.602	1.041	0.911	0.954	1.256	0.753	1.403	0.795	1.562	0.434	0.939	0.963	0.794	1.303	1.211	0.794	1.067	0.974	0.308	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15445	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.996

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	16-38	0.979	33-54	0.978	—	—	0.000	—	—	0.339	0.231	0.008	0.637	0.099	0.297	0.325	0.143	0.380	0.124

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004846	1.000	2.000	Hsc_gene_23266.t1;Hsc_gene_23266.t2	Hsc_gene_23265.t1;Hsc_gene_23266.t1;Hsc_gene_23266.t2	—	O62471.2 Protein qui-1 [Caenorhabditis elegans]	KAH7708528.1 CBR-QUI-1 protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.965\|GO:0005575_0.920\|GO:0110165_0.920\|GO:0071944_0.821\|GO:0016020_0.811\|GO:0005622_0.800\|GO:0005886_0.800\|GO:0050896_0.798\|GO:0043226_0.725\|GO:0042221_0.711\|GO:0043229_0.700\|GO:1901698_0.685\|GO:0043227_0.675\|GO:0043279_0.670\|GO:0043231_0.646\|GO:0098590_0.616\|GO:0042995_0.605\|GO:0120025_0.603\|GO:0005634_0.582\|GO:0043005_0.582\|GO:0036477_0.572\|GO:0030425_0.564\|GO:0044297_0.564\|GO:0097447_0.564\|GO:0030424_0.560\|GO:0043025_0.559	IPR001680+1010-1062_1048-1071_1065-1104_1067-1102_1107-1146_1109-1146_1114-1155_1149-1188_1161-1187_1191-1229_1232-1272_1306-1348_1351-1391_1354-1390_1359-1400_1394-1433_1486-1527_1495-1536_1531-1570_1534-1570_1538-1579_1573-1611+\|IPR011047+1048-1427+\|IPR015943+975-1078_1079-1301_1302-1454_1464-1674+\|IPR019775+1557-1571+\|IPR027417+405-610+\|IPR036322+1322-1639+\|IPR052752+98-1706+	SM00320+1010-1062_1065-1104_1107-1146_1149-1188_1191-1229_1232-1272_1306-1348_1351-1391_1394-1433_1486-1527_1531-1570_1573-1611+	PF00400+1067-1102_1109-1146_1161-1187_1354-1390_1534-1570+WD_domain,_G-beta_repeat	—	PTHR19871+98-1706+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-56;1660-1817	1.000	57-1659	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.513	196174.870	6.025	-14.500	23.500	8.586	44.304	55.696	12.053	11.447	54.816

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1311.572	2138.331	2027.797	796.670	263.587	221.697	137.145	679.732	981.110	2652.934	1936.438

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.306	-1.562	-1.240	-1.626	—	-0.682	1.517	-2.168	—	—	—	—	—

No JSON data available for plots.

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