Hg_chrom8_TN10mRNA_16346
Organism: Heterodera glycines Gene Locus: chr8:8324436-8327770 Feature type: polypeptideProtein Sequence
Length: 394
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.24 | 2.125 | 1.154 | 0.438 | 0.761 | 1.236 | 0.574 | 0.508 | 1.015 | 0.823 | 0.808 | 0.896 | 0.705 | 0.781 | 1.191 | 1.342 | 1.664 | 0.884 | 0.39 | 0.448 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15446
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.279
|
0.100
|
0.007
|
0.464
|
0.138
|
0.246
|
0.145
|
0.021
|
0.222
|
0.164
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012329
|
1.000
|
1.000
|
Hsc_gene_23264.t1
|
— | — | — |
KAI1724872.1 dcp1-like decapping family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000290|GO:0008047|GO:0043085
|
GO:0005575_0.910|GO:0110165_0.909|GO:0005622_0.831|GO:0043226_0.771|GO:0043229_0.759|GO:0005737_0.736|GO:0008150_0.661|GO:0009987_0.610|GO:0016020_0.583|GO:0003674_0.567|GO:0005488_0.546|GO:0043228_0.544|GO:0043232_0.542|GO:0008152_0.503
|
IPR010334+5-66_6-66+|IPR011993+1-105+
|
— |
PF06058+6-66+Dcp1-like_decapping_family
|
— |
PTHR16290+5-66+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
138-394
|
1.000
|
1-137
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.850
|
42642.170
|
7.663
|
3.000
|
23.096
|
5.584
|
56.599
|
43.401
|
12.183
|
10.914
|
61.675
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
1800.237
|
905.125
|
782.326
|
957.941
|
1514.683
|
1271.859
|
3838.736
|
542.489
|
591.544
|
3752.447
|
2397.774
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.441
|
— |
0.402
|
0.629
|
-0.237
|
1.604
|
-1.333
|
2.965
|
-2.778
|
— | — | — | — |
No JSON data available for plots.