Hg_chrom8_TN10mRNA_16348
Organism: Heterodera glycines Gene Locus: chr8:8331168-8333836 Feature type: polypeptideProtein Sequence
Length: 721
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.887 | 0.742 | 1.185 | 0.478 | 1.202 | 1.458 | 0.693 | 1.387 | 1.202 | 1.218 | 1.009 | 1.224 | 1.156 | 0.907 | 1.613 | 0.911 | 1.091 | 0.714 | 0.96 | 0.245 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15448
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKK,KRVK,RRFGARREQFRKRDM,KKNADHLQRTSRRKLA,ARRKRKEWRQDRGHKG,RRKLADQIADVISRDRSR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.773
|
0.123
|
0.020
|
0.342
|
0.181
|
0.046
|
0.054
|
0.016
|
0.083
|
0.093
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000277
|
7.000
|
2.000
|
Hsc_gene_19559.t1;Hsc_gene_22469.t1
|
Hsc_gene_19189.t1;Hsc_gene_19559.t1;Hsc_gene_25723.t1;Hsc_gene_5850.t1;Hsc_gene_787.t1;Hsc_gene_787.t2
|
— | — |
KAI1707339.1 hypothetical protein DdX_12435 [Ditylenchus destructor]
|
No
|
-0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
PTHR31424+354-512+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-263
|
1.000
|
264-721
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.679
|
81491.560
|
8.486
|
16.000
|
31.068
|
9.015
|
52.982
|
47.018
|
17.337
|
13.731
|
47.018
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
69.932
|
16.227
|
31.310
|
17.441
|
17.900
|
19.110
|
128.869
|
277.661
|
21.332
|
99.260
|
65.863
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
— |
-0.736
|
— | — |
2.764
|
3.754
|
-0.963
|
— | — | — | — | — |
No JSON data available for plots.