Hg_chrom8_TN10mRNA_16350
Organism: Heterodera glycines Gene Locus: chr8:8337969-8339969 Feature type: polypeptideProtein Sequence
Length: 313
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.04 | 0.371 | 1.162 | 0.551 | 1.171 | 0.655 | 1.027 | 1.278 | 0.852 | 0.993 | 0.678 | 1.503 | 1.154 | 0.676 | 1.956 | 1.05 | 1.309 | 0.92 | 0.983 | 0.752 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15450
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRYISQSGRFRRERSK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.665
|
0.227
|
0.040
|
0.575
|
0.020
|
0.058
|
0.037
|
0.015
|
0.075
|
0.192
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001439
|
3.000
|
2.000
|
Hsc_gene_23260.t1;Hsc_gene_23289.t1
|
Hsc_gene_23260.t1;Hsc_gene_23289.t1
|
— |
Q54DF7.1 Probable serine/threonine-protein kinase DDB_G0292354 [Dictyostelium discoideum]
|
AAL78213.1 probable protein kinase Hgg-20 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0005575_0.844|GO:0110165_0.844|GO:0005622_0.759|GO:0008150_0.702|GO:0009987_0.641|GO:0005737_0.627|GO:0003674_0.597|GO:0043226_0.559|GO:0016020_0.557|GO:0043229_0.544|GO:0003824_0.538|GO:0065007_0.511
|
IPR000719+44-312_44-313_45-275+|IPR011009+41-280+|IPR017441+50-75+|IPR050235+43-280+
|
SM00220+44-312+
|
PF00069+45-275+Protein_kinase_domain
|
— |
PTHR11909+43-280+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-31
|
1.000
|
32-313
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
34835.290
|
8.061
|
6.000
|
30.032
|
10.543
|
49.521
|
50.479
|
16.613
|
13.419
|
52.077
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
253.224
|
2.064
|
2.514
|
17.935
|
102.706
|
904.459
|
27.542
|
894.871
|
0.000
|
375.819
|
214.754
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.982
|
2.955
|
2.489
|
3.152
|
-5.029
|
— |
-4.879
|
-9.348
|
5.021
|
— | — | — |
No JSON data available for plots.