Hg_chrom8_TN10mRNA_16353
Organism: Heterodera glycines Gene Locus: chr8:8345704-8346350 Feature type: polypeptideProtein Sequence
Length: 131
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.799 | 0.0 | 1.527 | 0.526 | 0.763 | 1.174 | 0.364 | 1.908 | 1.187 | 1.238 | 1.157 | 1.796 | 0.636 | 1.028 | 2.025 | 0.763 | 1.126 | 0.578 | 1.762 | 1.796 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15453
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.899
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKR,KMKRLR
|
43-70
|
0.933
|
— | — | — | — |
0.000
|
— | — |
0.802
|
0.339
|
0.011
|
0.328
|
0.018
|
0.030
|
0.015
|
0.099
|
0.136
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010756
|
2.000
|
0.000
|
0.000
|
Hsc_gene_23260.t1
|
— | — |
CAD2189987.1 unnamed protein product [Meloidogyne enterolobii];CAK5072432.1 unnamed protein product [Meloidogyne enterolobii];CAK5072498.1 unnamed protein product [Meloidogyne enterolobii];CAK5091323.1 unnamed protein product [Meloidogyne enterolobii];CAK5095719.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.925|GO:0009987_0.875|GO:0065007_0.862|GO:0050789_0.845|GO:0050794_0.838|GO:0032502_0.750|GO:0022414_0.696|GO:0003006_0.688|GO:0005575_0.597|GO:0110165_0.587|GO:0005622_0.561|GO:0043226_0.528|GO:0016020_0.515|GO:0043229_0.510
|
IPR011009+2-106+|IPR050235+1-106+
|
— | — | — |
PTHR11909+1-106+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
112-131
|
1.000
|
1-111
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.509
|
15574.900
|
9.716
|
8.500
|
34.351
|
14.504
|
51.145
|
48.855
|
21.374
|
12.977
|
41.221
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
9.571
|
0.298
|
0.069
|
0.245
|
1.398
|
10.439
|
1.419
|
40.577
|
0.000
|
21.455
|
12.260
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
2.913
|
-2.860
|
1.844
|
-4.684
|
— | — | — | — | — |
No JSON data available for plots.