Hg_chrom8_TN10mRNA_16355
Organism: Heterodera glycines Gene Locus: chr8:8350876-8353451 Feature type: polypeptideProtein Sequence
Length: 408
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.855 | 0.513 | 1.025 | 0.845 | 0.98 | 0.88 | 0.788 | 1.593 | 0.98 | 1.192 | 0.706 | 1.153 | 1.294 | 0.707 | 2.551 | 0.735 | 1.326 | 0.668 | 1.131 | 1.009 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15455
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRR,RRSARRTTTTRCRRA,RRYISQSGRFRRERSK,RRRSSTTTVIQTPGRAGKK
|
26-56
|
0.997
|
1-45
|
0.958
|
— | — |
0.000
|
— | — |
0.485
|
0.329
|
0.052
|
0.399
|
0.015
|
0.038
|
0.074
|
0.049
|
0.070
|
0.250
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001439
|
3.000
|
2.000
|
Hsc_gene_23260.t1;Hsc_gene_23289.t1
|
Hsc_gene_23260.t1;Hsc_gene_23289.t1
|
— |
Q54DF7.1 Probable serine/threonine-protein kinase DDB_G0292354 [Dictyostelium discoideum]
|
KAI1715266.1 protein kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0005575_0.803|GO:0110165_0.800|GO:0005622_0.732|GO:0008150_0.662|GO:0003674_0.623|GO:0009987_0.606|GO:0005737_0.573|GO:0003824_0.549|GO:0016020_0.541|GO:0043226_0.535|GO:0043229_0.522|GO:0065007_0.508
|
IPR000719+67-357_69-324+|IPR011009+68-369+|IPR017441+73-98+|IPR050235+67-382+
|
SM00220+67-357+
|
PF00069+69-324+Protein_kinase_domain
|
— |
PTHR11909+67-382+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
369-408
|
1.000
|
1-368
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.556
|
47236.940
|
10.220
|
29.500
|
31.863
|
12.745
|
50.735
|
49.265
|
20.343
|
11.520
|
45.588
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
35.915
|
0.829
|
0.365
|
0.556
|
4.825
|
33.651
|
9.025
|
262.400
|
0.000
|
40.259
|
23.005
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
3.079
|
2.810
|
-1.890
|
2.848
|
-4.717
|
-6.080
|
— | — | — | — |
No JSON data available for plots.