Hg_chrom8_TN10mRNA_16356
Organism: Heterodera glycines Gene Locus: chr8:8354042-8358024 Feature type: polypeptideProtein Sequence
Length: 294
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.107 | 1.187 | 0.866 | 0.469 | 0.85 | 1.308 | 0.81 | 1.701 | 0.831 | 1.057 | 0.567 | 0.8 | 0.945 | 0.981 | 2.221 | 0.68 | 1.115 | 1.237 | 0.523 | 0.7 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15456
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RREEQHHVADAEDQRRGVR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.574
|
0.137
|
0.041
|
0.574
|
0.035
|
0.130
|
0.068
|
0.013
|
0.142
|
0.093
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004843
|
2.000
|
1.000
|
Hsc_gene_23259.t1
|
— | — |
F4HPN2.1 Probable serine/threonine protein kinase IRE4 [Arabidopsis thaliana]
|
KAI3417815.1 Serine/threonine-protein kinase Nek6 [Globodera pallida]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.880|GO:0003674_0.858|GO:0003824_0.811|GO:0009987_0.800|GO:0016740_0.785|GO:0005575_0.743|GO:0110165_0.734|GO:0016772_0.722|GO:0140096_0.721|GO:0065007_0.714|GO:0050789_0.708|GO:0016301_0.694|GO:0005622_0.692|GO:0050794_0.679|GO:0016773_0.658|GO:0050896_0.656|GO:0004672_0.639|GO:0008152_0.592|GO:0044237_0.585|GO:0004674_0.565|GO:0043170_0.541|GO:0044238_0.528|GO:0005737_0.527|GO:0048518_0.517
|
IPR000719+65-274_65-294_139-241+|IPR008271+186-198+|IPR011009+60-239+|IPR017441+69-100+|IPR050660+71-236+
|
SM00220+65-274+
|
PF00069+139-241+Protein_kinase_domain
|
— |
PTHR43671+71-236+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-55;261-294
|
1.000
|
56-260
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
32958.380
|
10.505
|
19.000
|
27.891
|
9.864
|
49.660
|
50.340
|
18.027
|
9.864
|
52.381
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
24.602
|
1.304
|
1.412
|
2.571
|
3.455
|
7.470
|
178.145
|
6.476
|
0.000
|
32.320
|
18.469
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
4.582
|
— |
4.926
|
— | — | — | — | — |
No JSON data available for plots.