SCN Proteipedia

Hg_chrom8_TN10mRNA_16358

Organism: Heterodera glycines Gene Locus: chr8:8358664-8360632 Feature type: polypeptide

Protein Sequence

Length: 203

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.146	1.146	0.806	2.038	1.396	1.389	0.762	0.985	0.547	1.465	0.448	2.028	1.505	0.947	1.508	0.493	0.485	0.896	1.137	0.435	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15457	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_Clustered	0.426

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.682	0.138	0.005	0.416	0.174	0.195	0.144	0.003	0.117	0.157

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012331	2.000	0.000	0.000	Hsc_gene_23283.t1;Hsc_gene_23283.t2	—	—	KAF7639302.1 DNA polymerase epsilon catalytic subunit [Meloidogyne graminicola];KAF7639303.1 DNA polymerase epsilon catalytic subunit [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003887\|GO:0006260\|GO:0006281\|GO:0008622	GO:0008150_0.937\|GO:0009987_0.876\|GO:0005575_0.871\|GO:0065007_0.870\|GO:0003674_0.869\|GO:0050789_0.861\|GO:0110165_0.857\|GO:0050794_0.839\|GO:0005488_0.813\|GO:0050896_0.809\|GO:0008152_0.796\|GO:0044238_0.777\|GO:0051716_0.777\|GO:0005622_0.776\|GO:0044237_0.773\|GO:0043170_0.768\|GO:0005515_0.767\|GO:0009058_0.766\|GO:0007154_0.763\|GO:0023052_0.763\|GO:0016020_0.761\|GO:0048519_0.751\|GO:0007165_0.746\|GO:0044249_0.746\|GO:0009059_0.743\|GO:0048523_0.734\|GO:0043226_0.728\|GO:0071840_0.728\|GO:0006139_0.727\|GO:0016043_0.725\|GO:0006950_0.722\|GO:0034654_0.718\|GO:0003824_0.716\|GO:0090304_0.712\|GO:0016070_0.711\|GO:0141187_0.709\|GO:0032774_0.708\|GO:0043229_0.701\|GO:0009056_0.699\|GO:0035556_0.693\|GO:0097159_0.690\|GO:0006996_0.688\|GO:0043227_0.688\|GO:0009057_0.687\|GO:0033554_0.687\|GO:0016740_0.684\|GO:0003676_0.682\|GO:0016787_0.681\|GO:0007049_0.677\|GO:0051726_0.677\|GO:0034655_0.676\|GO:0000280_0.675\|GO:0006259_0.675\|GO:0006974_0.675\|GO:0022402_0.675\|GO:0048285_0.675\|GO:0141188_0.675\|GO:0006401_0.674\|GO:0010564_0.674\|GO:0043231_0.674\|GO:0000278_0.673\|GO:0140014_0.673\|GO:1903047_0.673\|GO:0000075_0.670\|GO:0000076_0.670\|GO:0000077_0.670\|GO:0000084_0.670\|GO:0000086_0.670\|GO:0000731_0.670\|GO:0006260_0.670\|GO:0006261_0.670\|GO:0006269_0.670\|GO:0006271_0.670\|GO:0006272_0.670\|GO:0006281_0.670\|GO:0006284_0.670\|GO:0006289_0.670\|GO:0006297_0.670\|GO:0006301_0.670\|GO:0006302_0.670\|GO:0006303_0.670\|GO:0006310_0.670\|GO:0007062_0.670\|GO:0007064_0.670\|GO:0007093_0.670\|GO:0007346_0.670\|GO:0010389_0.670\|GO:0010948_0.670\|GO:0010972_0.670\|GO:0019985_0.670\|GO:0022403_0.670\|GO:0022616_0.670\|GO:0031570_0.670\|GO:0031573_0.670\|GO:0033314_0.670\|GO:0035822_0.670\|GO:0035825_0.670\|GO:0042276_0.670\|GO:0042770_0.670\|GO:0043137_0.670\|GO:0044770_0.670\|GO:0044772_0.670\|GO:0044773_0.670\|GO:0044774_0.670\|GO:0044818_0.670\|GO:0044839_0.670\|GO:0044848_0.670\|GO:0045004_0.670\|GO:0045005_0.670\|GO:0045786_0.670\|GO:0045930_0.670\|GO:0051276_0.670\|GO:0051320_0.670\|GO:0051325_0.670\|GO:0051329_0.670\|GO:0071897_0.670\|GO:0090592_0.670\|GO:0098763_0.670\|GO:1901987_0.670\|GO:1901988_0.670\|GO:1901990_0.670\|GO:1901991_0.670\|GO:1902749_0.670\|GO:1902750_0.670\|GO:0016788_0.666\|GO:0003677_0.665\|GO:0003690_0.665\|GO:0003723_0.665\|GO:0016772_0.657\|GO:0004518_0.655\|GO:0140640_0.655\|GO:0003697_0.650\|GO:0003729_0.650\|GO:0003887_0.650\|GO:0004527_0.650\|GO:0004529_0.650\|GO:0004536_0.650\|GO:0008296_0.650\|GO:0008297_0.650\|GO:0008310_0.650\|GO:0008408_0.650\|GO:0016779_0.650\|GO:0016796_0.650\|GO:0016895_0.650\|GO:0032182_0.650\|GO:0032183_0.650\|GO:0034061_0.650\|GO:0140097_0.650\|GO:0032991_0.620\|GO:0005634_0.607\|GO:0043228_0.590\|GO:0043232_0.589\|GO:0031974_0.588\|GO:0043233_0.588\|GO:0070013_0.588\|GO:0031981_0.574\|GO:0005654_0.570\|GO:1902494_0.558\|GO:0005694_0.549\|GO:0140513_0.549\|GO:0140535_0.549\|GO:1990234_0.547\|GO:0061695_0.545\|GO:0000228_0.540\|GO:0000808_0.540\|GO:0000811_0.540\|GO:0005656_0.540\|GO:0005657_0.540\|GO:0008622_0.540\|GO:0031261_0.540\|GO:0032993_0.540\|GO:0036387_0.540\|GO:0042555_0.540\|GO:0042575_0.540\|GO:0043596_0.540\|GO:0071162_0.540\|GO:0097373_0.540	IPR029703+3-154+	—	PF22912+136-197+Zinc_finger_domain_of_DNA_polymerase-epsilon	—	PTHR10670+3-154+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-203	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.569	22878.290	5.335	-3.000	25.123	10.345	41.872	58.128	12.315	12.808	48.768

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	blue	276.177	57.046	66.384	133.207	190.803	106.380	188.129	33.872	27.149	896.978	524.194

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	1.086	1.117	0.487	-0.828	0.832	-1.762	2.617	—	—	—	—	—

No JSON data available for plots.

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