Hg_chrom8_TN10mRNA_16359
Organism: Heterodera glycines Gene Locus: chr8:8360709-8365953 Feature type: polypeptideProtein Sequence
Length: 450
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.344 | 1.034 | 1.131 | 1.073 | 1.222 | 1.083 | 0.794 | 0.889 | 0.889 | 1.652 | 0.909 | 1.307 | 0.802 | 0.299 | 1.361 | 1.111 | 0.765 | 0.808 | 0.684 | 0.131 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15458
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.453
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.003
|
— | — |
0.620
|
0.081
|
0.002
|
0.671
|
0.110
|
0.104
|
0.157
|
0.005
|
0.093
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012332
|
1.000
|
1.000
|
Hsc_gene_23284.t1
|
Hsc_gene_23284.t1
|
— |
Q12894.4 Interferon-related developmental regulator 2 [Homo sapiens]
|
KAH7729572.1 interferon-related developmental regulator 2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.949|GO:0009987_0.905|GO:0065007_0.727|GO:0050789_0.714|GO:0050794_0.689|GO:0003674_0.625|GO:0005575_0.590|GO:0110165_0.590|GO:0005488_0.572|GO:0008152_0.522|GO:0005622_0.518|GO:0044238_0.513|GO:0009058_0.506|GO:0044237_0.506|GO:0016020_0.505|GO:0043170_0.501
|
IPR006921+388-440+|IPR007701+70-331+|IPR016024+80-339+|IPR039777+78-437+
|
— |
PF04836+388-440+Interferon-related_protein_conserved_region|PF05004+70-331+Interferon-related_developmental_regulator_(IFRD)
|
— |
PTHR12354+78-437+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4;393-450
|
1.000
|
5-392
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.571
|
49099.930
|
6.495
|
0.000
|
28.000
|
6.000
|
49.111
|
50.889
|
14.444
|
13.556
|
51.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1238.104
|
985.922
|
1151.399
|
1040.455
|
1076.693
|
1059.897
|
1079.827
|
1464.899
|
698.554
|
1945.629
|
1411.168
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
0.360
|
-0.296
|
— | — | — | — | — |
No JSON data available for plots.