Hg_chrom8_TN10mRNA_16360
Organism: Heterodera glycines Gene Locus: chr8:8367170-8375050 Feature type: polypeptideProtein Sequence
Length: 686
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.254 | 0.61 | 0.742 | 0.553 | 0.656 | 1.271 | 0.729 | 2.041 | 0.939 | 1.556 | 0.574 | 0.943 | 1.012 | 0.925 | 1.398 | 1.208 | 1.051 | 1.104 | 1.346 | 0.429 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15459
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — |
5-25
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.299
|
0.057
|
0.014
|
0.146
|
0.745
|
0.352
|
0.698
|
0.055
|
0.178
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012333
|
1.000
|
1.000
|
Hsc_gene_23285.t1
|
Hsc_gene_23285.t1
|
— |
Q6DDG2.1 Uncharacterized protein KIAA2013 homolog [Xenopus laevis]
|
KAI1715407.1 protein C17H12.2 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.926|GO:0110165_0.926|GO:0016020_0.876
|
IPR018795+23-464_28-505_499-664+
|
— |
PF10222+28-505_499-664+Uncharacterized_conserved_protein_(DUF2152)
|
— |
PTHR31386+23-464+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-686
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.831
|
75311.460
|
9.863
|
32.000
|
22.741
|
10.933
|
45.190
|
54.810
|
14.723
|
8.017
|
52.187
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
666.143
|
1053.489
|
645.802
|
721.268
|
741.957
|
871.165
|
930.578
|
735.931
|
404.747
|
473.243
|
443.887
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.935
|
-0.684
|
0.268
|
— |
0.246
|
— |
-0.349
|
0.481
|
— | — | — | — | — |
No JSON data available for plots.