Hg_chrom8_TN10mRNA_16362
Organism: Heterodera glycines Gene Locus: chr8:8383891-8391821 Feature type: polypeptideProtein Sequence
Length: 724
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.739 | 1.253 | 0.954 | 0.714 | 0.76 | 1.098 | 0.904 | 0.898 | 1.166 | 1.325 | 1.277 | 1.95 | 1.727 | 0.956 | 0.846 | 0.651 | 1.064 | 0.837 | 1.381 | 0.65 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15461
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
FKVK
|
— | — | — | — | — | — |
0.049
|
— | — |
0.191
|
0.206
|
0.025
|
0.287
|
0.243
|
0.247
|
0.237
|
0.008
|
0.196
|
0.607
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001441
|
1.000
|
4.000
|
Hsc_gene_7024.t1;Hsc_gene_7024.t2;Hsc_gene_7024.t3;Hsc_gene_7024.t4
|
— | — | — |
KAI3419416.1 Beta-1,3-galactosyltransferase 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0016020|GO:0016758
|
GO:0008150_0.949|GO:0008152_0.768|GO:0009987_0.748|GO:0009058_0.727|GO:0003674_0.718|GO:0044238_0.670|GO:0044237_0.641|GO:0003824_0.612|GO:0044249_0.610|GO:0005575_0.576|GO:0110165_0.573|GO:1901135_0.566|GO:1901137_0.542|GO:0016740_0.526
|
IPR002659+448-668_468-660+
|
— |
PF01762+468-660+Galactosyltransferase
|
— |
PTHR11214+448-668+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-724
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.848
|
81540.490
|
9.448
|
26.500
|
24.171
|
12.017
|
44.890
|
55.110
|
14.365
|
9.807
|
48.204
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightyellow
|
202.230
|
5.457
|
16.837
|
12.736
|
10.501
|
113.334
|
64.658
|
161.539
|
0.691
|
739.838
|
423.060
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.387
|
1.085
|
— | — |
3.444
|
-0.801
|
— |
-1.176
|
-9.839
|
4.044
|
-5.958
|
— | — |
No JSON data available for plots.