Hg_chrom8_TN10mRNA_16364
Organism: Heterodera glycines Gene Locus: chr8:8407056-8410116 Feature type: polypeptideProtein Sequence
Length: 297
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.331 | 0.548 | 0.612 | 0.697 | 0.673 | 0.95 | 1.403 | 0.505 | 0.973 | 1.183 | 0.663 | 1.783 | 1.777 | 1.166 | 1.168 | 0.529 | 1.049 | 1.224 | 0.777 | 0.693 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15463
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain|mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
18-41
|
0.955
|
— | — |
0.000
|
— | — |
0.098
|
0.918
|
0.103
|
0.141
|
0.173
|
0.188
|
0.163
|
0.102
|
0.252
|
0.099
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000876
|
4.000
|
2.000
|
Hsc_gene_23292.t1;Hsc_gene_23292.t2
|
Hsc_gene_23292.t1;Hsc_gene_23292.t2
|
— |
Q27257.1 Protein dif-1 [Caenorhabditis elegans]
|
KAI3422508.1 Des-methyl DIF-1 methyltransferase A [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.838|GO:0005575_0.785|GO:0110165_0.785|GO:0016020_0.708|GO:0005622_0.664|GO:0005737_0.664|GO:0043226_0.612|GO:0009987_0.603|GO:0006810_0.596|GO:0051179_0.596|GO:0051234_0.596|GO:0043229_0.589|GO:0003674_0.588|GO:0043227_0.584|GO:0043231_0.580
|
IPR018108+4-95_4-97_103-198_104-196_204-287_205-291+|IPR023395+1-102_5-286_103-295+|IPR050567+3-291+
|
— |
PF00153+4-97_103-198_204-287+Mitochondrial_carrier_protein
|
— |
PTHR45624+3-291+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-297
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.875
|
31788.970
|
9.402
|
9.500
|
18.519
|
10.774
|
34.680
|
65.320
|
11.111
|
7.407
|
55.219
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
1084.174
|
529.731
|
1194.817
|
1098.254
|
1473.811
|
1886.287
|
1169.232
|
1713.917
|
604.399
|
890.192
|
767.709
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.945
|
0.915
|
— |
0.392
|
0.371
|
-0.681
|
— |
-0.412
|
— | — | — | — | — |
No JSON data available for plots.