Hg_chrom8_TN10mRNA_16367
Organism: Heterodera glycines Gene Locus: chr8:8415768-8417454 Feature type: polypeptideProtein Sequence
Length: 301
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.082 | 1.313 | 0.544 | 0.0 | 0.554 | 0.511 | 0.791 | 0.332 | 0.295 | 0.404 | 0.503 | 0.391 | 0.369 | 1.533 | 4.678 | 2.231 | 1.743 | 0.302 | 0.0 | 0.195 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15465
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRATSNTASTAAAGRGRSR,GRGRSRSRNTAGRRSASNRSRAASSNRDRGTRRRSSRARNASRRGQDRSGTRRSSSTRKASRRGQGRRETRRSPSARKPPRRRQDRSGTRPPSSTSKASRRRQDTGTRRSSSASRNASRRRQDRGGTRSSASVRKASRRHRRRIVPRKSKPKKRSKSTKRRGRGRPRRSRRGYRRP
|
23-47
|
0.991
|
— | — | — | — |
0.000
|
— | — |
0.880
|
0.039
|
0.007
|
0.244
|
0.027
|
0.032
|
0.038
|
0.021
|
0.113
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004848
|
2.000
|
1.000
|
Hsc_gene_23295.t1
|
Hsc_gene_23295.t1
|
— | — | — |
WP_025781215
|
0.420
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-301
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.764
|
33419.870
|
12.832
|
61.000
|
33.223
|
2.658
|
67.110
|
32.890
|
26.910
|
6.312
|
60.797
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
438.214
|
5.626
|
17.640
|
60.371
|
233.309
|
1704.870
|
148.771
|
2237.507
|
0.255
|
263.958
|
150.942
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.411
|
3.281
|
1.886
|
1.919
|
2.883
|
-3.509
|
— |
-3.765
|
-8.365
|
6.295
|
— | — | — |
No JSON data available for plots.