Hg_chrom8_TN10mRNA_16368
Organism: Heterodera glycines Gene Locus: chr8:8418546-8419555 Feature type: polypeptideProtein Sequence
Length: 150
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.388 | 0.93 | 0.606 | 2.069 | 1.111 | 1.709 | 0.397 | 2.667 | 0.889 | 0.45 | 0.606 | 3.137 | 1.481 | 1.41 | 1.633 | 1.429 | 0.546 | 0.707 | 2.051 | 0.98 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15466
|
— | — |
1.778
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — |
21-51
|
0.890
|
— | — |
0.000
|
— | — |
0.447
|
0.304
|
0.090
|
0.565
|
0.181
|
0.093
|
0.084
|
0.008
|
0.105
|
0.226
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004849
|
2.000
|
1.000
|
Hsc_gene_9307.t1
|
Hsc_gene_17072.t1;Hsc_gene_9307.t1;Hsc_gene_9309.t1
|
— |
Q4V7B8.1 RING finger protein 44 [Rattus norvegicus]
|
CAH1225986.1 RLIM [Branchiostoma lanceolatum]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.856|GO:0005575_0.648|GO:0110165_0.644|GO:0003674_0.614|GO:0008152_0.560|GO:0043170_0.560|GO:0005622_0.559|GO:0009987_0.537|GO:0065007_0.503
|
IPR001841+88-129_89-128_89-129+|IPR013083+42-135+
|
SM00184+89-128+
|
PF13639+88-129+Ring_finger_domain
|
— |
PTHR45977+61-132+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
141-150
|
1.000
|
1-140
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.863
|
17766.220
|
8.056
|
7.000
|
27.333
|
16.667
|
51.333
|
48.667
|
17.333
|
10.000
|
45.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightyellow
|
140.179
|
3.201
|
6.665
|
4.933
|
9.191
|
133.676
|
5.877
|
238.063
|
0.000
|
462.682
|
264.390
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
3.888
|
-4.498
|
0.719
|
-5.196
|
-9.635
|
— |
-5.227
|
— | — |
No JSON data available for plots.