Hg_chrom8_TN10mRNA_16376
Organism: Heterodera glycines Gene Locus: chr8:8460374-8462126 Feature type: polypeptideProtein Sequence
Length: 228
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.785 | 1.224 | 0.558 | 0.0 | 0.219 | 1.012 | 0.679 | 0.439 | 0.292 | 0.83 | 0.665 | 0.774 | 0.365 | 0.928 | 3.491 | 1.128 | 2.157 | 0.731 | 0.337 | 0.516 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15474
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRASTAARSRARRRQQ,RRTASRRRASTAARSRARR,RRQGNNNDGDGTSTRKKRG,GTSTRKKRGSAMRRPLKLKPLLGRPKGSRKSRAAPRTAGQKRGRGRPRTVKKGRARRGK
|
63-83
|
0.998
|
1-91
|
0.987
|
— | — |
0.001
|
— | — |
0.896
|
0.052
|
0.020
|
0.298
|
0.048
|
0.056
|
0.063
|
0.050
|
0.072
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000742
|
6.000
|
0.000
|
0.000
|
Hsc_gene_321.t1
|
— | — | — |
MBP1756319
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
40-228
|
1.000
|
1-39
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.913
|
24967.210
|
12.710
|
40.000
|
26.754
|
4.386
|
57.018
|
42.982
|
22.368
|
4.386
|
60.088
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
616.082
|
7.049
|
13.606
|
52.684
|
198.185
|
2113.305
|
39.356
|
1781.022
|
0.000
|
1118.406
|
639.089
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.766
|
2.064
|
1.881
|
3.428
|
-5.736
|
— |
-5.354
|
-10.923
|
6.576
|
— | — | — |
No JSON data available for plots.