Hg_chrom8_TN10mRNA_16377
Organism: Heterodera glycines Gene Locus: chr8:8462604-8463656 Feature type: polypeptideProtein Sequence
Length: 109
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.707 | 1.28 | 0.0 | 1.898 | 0.917 | 1.411 | 0.328 | 0.917 | 1.019 | 0.496 | 0.973 | 2.698 | 0.765 | 0.706 | 3.37 | 0.393 | 1.053 | 0.556 | 0.706 | 0.809 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15475
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus|extracellular
|
— |
AARARTIKINRRNAKKARAAIGR
|
10-42
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.509
|
0.143
|
0.016
|
0.462
|
0.039
|
0.109
|
0.071
|
0.003
|
0.091
|
0.653
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000301
|
8.000
|
1.000
|
Hsc_gene_23296.t1
|
Hsc_gene_23302.t1
|
— |
Q9H0F5.4 E3 ubiquitin-protein ligase RNF38 [Homo sapiens]
|
KAJ0705500.1 putative transcription factor C2H2 family [Helianthus annuus]
|
No
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0008270
|
GO:0008150_0.762|GO:0005575_0.689|GO:0110165_0.688|GO:0005622_0.614|GO:0043226_0.542|GO:0003674_0.528|GO:0008152_0.523|GO:0043170_0.523|GO:0016020_0.512|GO:0043229_0.510
|
IPR001841+48-87_48-88+|IPR013083+20-95+|IPR024766+44-88+
|
SM00184+48-87+
|
PF12678+44-88+RING-H2_zinc_finger_domain
|
— |
PTHR45977+45-91+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-25;102-109
|
1.000
|
26-101
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.978
|
12701.880
|
11.758
|
20.000
|
30.275
|
8.257
|
50.459
|
49.541
|
24.771
|
5.505
|
44.954
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
526.270
|
2.217
|
3.370
|
4.397
|
43.840
|
960.328
|
23.831
|
1932.391
|
1.855
|
1187.151
|
679.167
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
3.279
|
4.470
|
-5.323
|
0.898
|
-6.197
|
-9.980
|
— |
-4.333
|
— | — |
No JSON data available for plots.