Hg_chrom8_TN10mRNA_16385
Organism: Heterodera glycines Gene Locus: chr8:8495555-8512420 Feature type: polypeptideProtein Sequence
Length: 1,175
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.306 | 1.108 | 1.068 | 0.528 | 1.163 | 1.506 | 0.567 | 1.404 | 0.983 | 1.242 | 0.619 | 1.752 | 0.426 | 1.146 | 1.685 | 0.875 | 0.739 | 0.98 | 0.524 | 0.576 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15482
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.341
|
0.119
|
0.009
|
0.616
|
0.129
|
0.148
|
0.175
|
0.040
|
0.570
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012340
|
2.000
|
0.000
|
0.000
|
— | — |
Q17162.1 Vinculin [Brugia malayi]
|
KAI1714749.1 vinculin family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003779|GO:0005198|GO:0007155|GO:0015629|GO:0051015
|
GO:0005575_0.922|GO:0110165_0.914|GO:0016020_0.813|GO:0071944_0.732|GO:0005622_0.720|GO:0005886_0.712|GO:0008150_0.707|GO:0003674_0.682|GO:0009987_0.660|GO:0043226_0.645|GO:0043229_0.626|GO:0005737_0.615|GO:0065007_0.584|GO:0050789_0.568|GO:0043228_0.513|GO:0043232_0.510|GO:0071840_0.504|GO:0032501_0.502
|
IPR000633+413-423_528-538+|IPR006077+144-1174+|IPR017997+482-1174+|IPR036723+175-385_389-498_521-674_680-749_751-988_1003-1169+
|
— |
PF01044+144-1174+Vinculin_family
|
G3DSA:1.20.120.230:FF:000010+988-1174+Vinculin_a
|
PTHR46180+482-1174+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-114;764-1003
|
2.000
|
115-763;1004-1175
|
2gdc_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.642
|
130589.060
|
7.082
|
10.500
|
28.000
|
6.979
|
49.277
|
50.723
|
15.149
|
12.851
|
51.234
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3606.589
|
5726.235
|
7537.708
|
2537.985
|
1165.277
|
6779.846
|
1255.003
|
12639.372
|
731.247
|
1114.855
|
950.452
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.168
|
-1.311
|
-1.462
|
-1.155
|
2.555
|
-2.424
|
0.798
|
-3.192
|
— | — | — | — | — |
No JSON data available for plots.