Hg_chrom8_TN10mRNA_16389
Organism: Heterodera glycines Gene Locus: chr8:8539001-8541242 Feature type: polypeptideProtein Sequence
Length: 398
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.818 | 1.578 | 1.096 | 0.52 | 0.544 | 1.482 | 0.538 | 1.256 | 1.452 | 1.392 | 1.218 | 0.591 | 1.256 | 1.015 | 1.333 | 0.969 | 0.947 | 0.761 | 1.546 | 0.222 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15486
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.978
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRQK,IKKKQKH,KRQSLRVAIKKNCRTLRK
|
48-96
|
0.966
|
12-61
|
0.994
|
— | — |
0.000
|
— | — |
0.809
|
0.161
|
0.018
|
0.254
|
0.035
|
0.032
|
0.047
|
0.024
|
0.201
|
0.188
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000622
|
2.000
|
5.000
|
Hsc_gene_15141.t1;Hsc_gene_23087.t1;Hsc_gene_23520.t1;Hsc_gene_9051.t1;Hsc_gene_9304.t1
|
Hsc_gene_16325.t1;Hsc_gene_17797.t1;Hsc_gene_17797.t2
|
— | — |
KAI3416240.1 hypothetical protein GPALN_005785 [Globodera pallida]
|
MBQ8657592
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-32
|
1.000
|
33-398
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.772
|
45089.780
|
10.552
|
26.000
|
26.382
|
9.799
|
51.508
|
48.492
|
17.085
|
9.296
|
48.744
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
blue
|
220.494
|
39.446
|
73.113
|
83.689
|
73.147
|
58.919
|
88.072
|
89.018
|
4.146
|
772.023
|
442.933
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.659
|
0.949
|
0.306
|
— | — |
0.591
|
0.487
|
— |
-7.674
|
— | — | — | — |
No JSON data available for plots.