SCN Proteipedia

Hg_chrom8_TN10mRNA_16393

Organism: Heterodera glycines Gene Locus: chr8:8563674-8567930 Feature type: polypeptide

Protein Sequence

Length: 397

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.762	0.586	1.466	0.174	2.183	0.646	1.02	1.889	0.896	0.953	1.259	0.741	0.7	0.775	2.056	0.828	0.578	0.611	0.775	0.815	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15490	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	0.977

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRKINDEKLAKRCKA,RKWEAEEEEEELRHKLMKK,LAKGSGSNRHADEDRRERDRGRERREQHHHHHHGHRRKSGRRGGGEGEPP	—	—	—	—	—	—	0.000	—	—	0.825	0.043	0.005	0.269	0.030	0.069	0.074	0.001	0.039	0.079

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002378	3.000	1.000	Hsc_gene_23223.t1	Hsc_gene_23209.t1;Hsc_gene_23209.t2;Hsc_gene_23223.t1	—	Q8BIZ6.1 Smad nuclear-interacting protein 1 [Mus musculus]	KAI1713888.1 FHA domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0005634	GO:0005575_0.884\|GO:0110165_0.879\|GO:0005622_0.853\|GO:0008150_0.803\|GO:0043226_0.803\|GO:0043229_0.789\|GO:0016020_0.772\|GO:0009987_0.711\|GO:0043227_0.709\|GO:0003674_0.691\|GO:0005488_0.676\|GO:0005634_0.670\|GO:0043231_0.670\|GO:0008152_0.634\|GO:0043170_0.634\|GO:0065007_0.621\|GO:0050789_0.608\|GO:0050794_0.591\|GO:0009058_0.588\|GO:0044237_0.588\|GO:0009059_0.585\|GO:0010467_0.585\|GO:0044249_0.585\|GO:0019222_0.528\|GO:0031323_0.526\|GO:0060255_0.523\|GO:0009889_0.506\|GO:0031326_0.506\|GO:0010556_0.502	IPR000253+258-322_259-322_259-339+\|IPR003617+8-83+\|IPR008984+215-348+\|IPR017923+9-84_32-78+\|IPR035441+1-101_3-83+\|IPR050923+127-380+	SM00240+258-322+\|SM00509+8-83+	PF00498+259-339+FHA_domain\|PF08711+32-78+TFIIS_helical_bundle-like_domain	G3DSA:2.60.200.20:FF:000008+189-351+smad_nuclear-interacting_protein_1	PTHR23308+127-380+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	69-224;352-397	2.000	1-68;225-351	8i0r_X	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.544	45570.440	6.145	-3.500	43.325	10.076	57.683	42.317	22.166	21.159	43.577

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	red	986.565	740.833	796.730	695.396	878.169	884.725	895.585	687.450	457.783	1880.802	1270.937

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.228	—	0.304	—	—	-0.472	0.524	—	—	—	—	—

No JSON data available for plots.

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