Hg_chrom8_TN10mRNA_16396
Organism: Heterodera glycines Gene Locus: chr8:8573596-8575840 Feature type: polypeptideProtein Sequence
Length: 371
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 2.539 | 1.191 | 0.735 | 0.0 | 0.314 | 0.553 | 0.706 | 0.135 | 0.24 | 0.437 | 0.327 | 0.634 | 0.225 | 0.985 | 2.475 | 0.732 | 3.844 | 0.531 | 0.0 | 0.317 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15493
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
TRTRRTASRRRASTAARSRARRRQQGASTNNRRTAPVRGRSSARARVSAAVRRASRRQGNNNDGDGTRTRKKRGAAMRRPLKLKPLRGRPRGSRKSRAAPRTAGQKRGRGRPRTVKKGRARRGRS
|
58-78
|
0.995
|
1-91
|
0.965
|
— | — |
0.001
|
— | — |
0.907
|
0.050
|
0.022
|
0.298
|
0.030
|
0.019
|
0.041
|
0.017
|
0.085
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000742
|
6.000
|
0.000
|
0.000
|
— | — | — | — |
MBP9722380
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
40-371
|
1.000
|
1-39
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.495
|
38058.790
|
12.334
|
31.500
|
20.485
|
2.156
|
56.334
|
43.666
|
14.555
|
5.930
|
74.124
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
784.893
|
17.084
|
57.148
|
82.367
|
247.428
|
2666.899
|
47.784
|
2179.323
|
1.028
|
1446.372
|
826.939
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.511
|
2.133
|
0.636
|
1.556
|
3.444
|
-5.790
|
— |
-5.364
|
-10.303
|
6.231
|
-2.303
|
— | — |
No JSON data available for plots.