Hg_chrom8_TN10mRNA_16397
Organism: Heterodera glycines Gene Locus: chr8:8577429-8578110 Feature type: polypeptideProtein Sequence
Length: 109
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.387 | 1.28 | 0.167 | 1.898 | 0.765 | 0.706 | 0.655 | 1.835 | 0.815 | 0.372 | 0.834 | 3.778 | 0.51 | 0.882 | 2.808 | 0.917 | 0.902 | 0.695 | 1.411 | 0.809 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15494
|
— | — |
1.778
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
SAARARSIKINRRNAKKARAAIGR
|
10-40
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.604
|
0.151
|
0.017
|
0.461
|
0.050
|
0.072
|
0.043
|
0.008
|
0.097
|
0.357
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004849
|
2.000
|
1.000
|
Hsc_gene_9307.t1
|
Hsc_gene_17072.t1;Hsc_gene_5646.t1;Hsc_gene_9299.t1;Hsc_gene_9299.t2;Hsc_gene_9307.t1;Hsc_gene_9309.t1
|
— |
Q4V7B8.1 RING finger protein 44 [Rattus norvegicus]
|
UZT28895.1 peroxisome biogenesis factor 10 variant 2 [Nucleocytoviricota sp.];UZT29247.1 peroxisome biogenesis factor 10 variant 2 [Nucleocytoviricota sp.]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.845|GO:0005575_0.641|GO:0110165_0.641|GO:0003674_0.585|GO:0008152_0.537|GO:0043170_0.537|GO:0005622_0.525
|
IPR001841+47-88_48-87_48-88+|IPR013083+3-94+
|
SM00184+48-87+
|
PF13639+47-88+Ring_finger_domain
|
— |
PTHR45977+42-91+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-35;103-109
|
1.000
|
36-102
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.818
|
12457.480
|
11.246
|
17.000
|
28.440
|
10.092
|
48.624
|
51.376
|
22.936
|
5.505
|
50.459
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
792.281
|
9.717
|
14.490
|
25.000
|
84.710
|
1912.521
|
32.448
|
1802.610
|
0.000
|
2010.669
|
1148.954
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.226
|
0.897
|
1.730
|
4.510
|
-5.871
|
— |
-5.648
|
-11.772
|
5.501
|
-4.269
|
— | — |
No JSON data available for plots.