Hg_chrom8_TN10mRNA_16400
Organism: Heterodera glycines Gene Locus: chr8:8599636-8603591 Feature type: polypeptideProtein Sequence
Length: 195
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.775 | 0.596 | 0.932 | 0.354 | 1.026 | 1.183 | 0.672 | 0.256 | 1.823 | 1.386 | 0.544 | 0.603 | 1.425 | 1.282 | 1.361 | 0.879 | 0.925 | 1.088 | 2.367 | 1.207 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15497
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.528
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum|golgi_apparatus
|
— |
RRGDIPAAWLPGVSGRRLR
|
8-28
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.155
|
0.117
|
0.015
|
0.221
|
0.790
|
0.521
|
0.697
|
0.004
|
0.178
|
0.365
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012341
|
1.000
|
1.000
|
Hsc_gene_9313.t1
|
Hsc_gene_9313.t1
|
— | — |
KAI1724889.1 PA domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.784|GO:0110165_0.782|GO:0008150_0.763|GO:0009987_0.612|GO:0016020_0.587|GO:0071944_0.553|GO:0003674_0.541|GO:0005622_0.541|GO:0005737_0.541|GO:0005886_0.529
|
IPR003137+72-155+|IPR046450+72-151+
|
— |
PF02225+72-155+PA_domain
|
— |
PTHR22702+15-163+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-195
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.584
|
22302.700
|
5.319
|
-1.500
|
22.051
|
12.821
|
41.026
|
58.974
|
10.769
|
11.282
|
46.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
568.548
|
588.611
|
397.106
|
295.738
|
327.339
|
332.194
|
579.906
|
260.711
|
499.565
|
1069.620
|
825.311
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.797
|
-1.130
|
-0.317
|
— | — |
0.814
|
-0.452
|
1.295
|
— | — | — | — | — |
No JSON data available for plots.