Hg_chrom8_TN10mRNA_16401
Organism: Heterodera glycines Gene Locus: chr8:8605122-8608046 Feature type: polypeptideProtein Sequence
Length: 282
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.072 | 0.99 | 1.225 | 1.101 | 1.478 | 1.182 | 0.507 | 0.709 | 1.024 | 1.198 | 0.86 | 1.669 | 0.985 | 0.887 | 1.158 | 0.659 | 0.814 | 1.182 | 1.091 | 0.834 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15498
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
nucleus
|
— |
KPRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.814
|
0.277
|
0.013
|
0.420
|
0.134
|
0.169
|
0.115
|
0.002
|
0.146
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012342
|
1.000
|
1.000
|
Hsc_gene_9314.t1
|
Hsc_gene_9314.t1
|
— |
Q3T0Q3.1 DNA-directed RNA polymerase II subunit RPB3 [Bos taurus]
|
KAF7639330.1 Prp-4 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003899|GO:0006351|GO:0046983
|
GO:0005575_0.882|GO:0110165_0.809|GO:0005622_0.747|GO:0016020_0.702|GO:0043226_0.670|GO:0043229_0.648|GO:0043227_0.627|GO:0008150_0.616|GO:0043231_0.612|GO:0032991_0.568|GO:0005634_0.543|GO:0009987_0.508|GO:0005737_0.501
|
IPR011262+50-175+|IPR011263+18-266_20-260+|IPR022842+8-267+|IPR036603+5-267_9-265+|IPR036643+43-178_44-174+|IPR050518+1-270+
|
SM00662+18-266+
|
PF01000+50-175+RNA_polymerase_Rpb3/RpoA_insert_domain|PF01193+20-260+RNA_polymerase_Rpb3/Rpb11_dimerisation_domain
|
G3DSA:2.170.120.12:FF:000002+44-174+DNA-directed_RNA_polymerase_II_subunit_RPB3
|
PTHR11800+1-270+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-282
|
8qw9_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.753
|
31889.350
|
4.675
|
-10.000
|
28.369
|
9.220
|
46.809
|
53.191
|
12.766
|
15.603
|
49.645
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
516.654
|
286.836
|
425.941
|
520.126
|
684.574
|
676.398
|
1002.178
|
367.576
|
273.302
|
569.025
|
442.287
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.341
|
0.721
|
0.397
|
0.364
|
— |
0.578
|
-0.987
|
1.591
|
— | — | — | — | — |
No JSON data available for plots.