Hg_chrom8_TN10mRNA_16404
Organism: Heterodera glycines Gene Locus: chr8:8615009-8619732 Feature type: polypeptideProtein Sequence
Length: 423
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.467 | 0.935 | 1.075 | 0.489 | 1.34 | 0.909 | 0.76 | 1.064 | 1.839 | 1.214 | 1.97 | 1.947 | 0.854 | 0.591 | 0.482 | 0.54 | 1.356 | 1.182 | 0.546 | 0.556 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15501
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — | — |
0.016
|
— | — |
0.272
|
0.120
|
0.075
|
0.359
|
0.561
|
0.220
|
0.268
|
0.030
|
0.206
|
0.809
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000048
|
1.000
|
23.000
|
Hsc_gene_10541.t1;Hsc_gene_11232.t1;Hsc_gene_11943.t1;Hsc_gene_13765.t1;Hsc_gene_15231.t1;Hsc_gene_16374.t1;Hsc_gene_16375.t1;Hsc_gene_16377.t1;Hsc_gene_16378.t1;Hsc_gene_16379.t1;Hsc_gene_16382.t1;Hsc_gene_16392.t1;Hsc_gene_17002.t1;Hsc_gene_17003.t1;Hsc_gene_20516.t1;Hsc_gene_23182.t1;Hsc_gene_2925.t1;Hsc_gene_3952.t1;Hsc_gene_3952.t2;Hsc_gene_731.t1;Hsc_gene_8097.t1;Hsc_gene_9316.t1;Hsc_gene_9316.t2
|
— | — | — | — |
CAG8772661
|
0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.810|GO:0110165_0.808|GO:0008150_0.754|GO:0016020_0.723|GO:0005622_0.689|GO:0043226_0.638|GO:0043229_0.619|GO:0043227_0.578|GO:0043231_0.569|GO:0009987_0.568|GO:0005737_0.545|GO:0008152_0.522
|
IPR000626+71-134_140-223_164-216+|IPR029071+49-139_152-225+
|
— |
PF14560+71-134_164-216+Ubiquitin-like_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-423
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.618
|
47700.680
|
8.831
|
10.500
|
31.442
|
7.801
|
51.064
|
48.936
|
17.494
|
13.948
|
44.681
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
333.350
|
2.261
|
184.071
|
108.215
|
9.261
|
2.047
|
1.213
|
2.913
|
1594.602
|
146.213
|
766.951
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.113
|
5.438
|
-0.658
|
-3.580
|
— | — | — | — |
3.322
|
-3.703
|
-3.798
|
— | — |
No JSON data available for plots.