Hg_chrom8_TN10mRNA_16411
Organism: Heterodera glycines Gene Locus: chr8:8634011-8634850 Feature type: polypeptideProtein Sequence
Length: 107
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.63 | 1.304 | 0.0 | 1.934 | 0.935 | 0.959 | 0.445 | 1.402 | 1.038 | 0.379 | 0.85 | 3.299 | 0.779 | 0.719 | 3.242 | 0.534 | 1.072 | 0.708 | 0.719 | 0.55 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15508
|
— | — |
2.667
|
3.000
|
2.000
|
3.000
|
3.000
|
3.000
|
3.000
|
2.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
SAARARSIKINRRNAKKARAAIGRAG
|
10-39
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.558
|
0.106
|
0.020
|
0.461
|
0.029
|
0.062
|
0.041
|
0.004
|
0.075
|
0.495
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000301
|
8.000
|
1.000
|
Hsc_gene_23296.t1
|
Hsc_gene_23296.t1;Hsc_gene_23302.t1;Hsc_gene_3473.t1;Hsc_gene_5646.t1;Hsc_gene_9320.t1
|
— |
Q4V7B8.1 RING finger protein 44 [Rattus norvegicus]
|
PWA64197.1 RING/U-box superfamily protein [Artemisia annua]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.756|GO:0005575_0.679|GO:0110165_0.672|GO:0005622_0.576|GO:0003674_0.549
|
IPR001841+47-88_48-87_48-88+|IPR013083+20-95+|IPR052788+19-104+
|
SM00184+48-87+
|
PF13639+47-88+Ring_finger_domain
|
— |
PTHR45798+19-104+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-35;100-107
|
1.000
|
36-99
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.965
|
12325.440
|
11.763
|
18.500
|
29.907
|
8.411
|
49.533
|
50.467
|
24.299
|
5.607
|
47.664
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
84.757
|
0.760
|
1.336
|
3.241
|
6.783
|
74.331
|
8.115
|
347.796
|
0.000
|
204.927
|
117.101
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.951
|
— | — |
3.471
|
-3.185
|
2.112
|
-5.274
|
-8.450
|
— |
-4.528
|
— | — |
No JSON data available for plots.