Hg_chrom8_TN10mRNA_16418
Organism: Heterodera glycines Gene Locus: chr8:8659094-8665818 Feature type: polypeptideProtein Sequence
Length: 557
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.315 | 0.835 | 0.392 | 0.991 | 0.479 | 0.829 | 0.641 | 0.808 | 1.476 | 1.504 | 0.68 | 1.479 | 1.297 | 0.932 | 1.026 | 1.488 | 0.883 | 1.115 | 2.348 | 0.422 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15515
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.666
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
15-80
|
0.952
|
27-77
|
0.996
|
— | — |
0.000
|
— | — |
0.102
|
0.172
|
0.039
|
0.154
|
0.324
|
0.294
|
0.295
|
0.209
|
0.719
|
0.130
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012347
|
1.000
|
1.000
|
Hsc_gene_9324.t1
|
Hsc_gene_9324.t1
|
— | — |
KAH7726531.1 Protein F45E4.11 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.954|GO:0009987_0.900|GO:0003674_0.816|GO:0051179_0.774|GO:0005575_0.771|GO:0006810_0.771|GO:0051234_0.771|GO:0110165_0.770|GO:0055085_0.724|GO:0016020_0.722|GO:0005215_0.681|GO:0022857_0.681|GO:0071944_0.595|GO:0005886_0.575|GO:0015711_0.512|GO:0005622_0.508|GO:0015849_0.506|GO:0046942_0.506|GO:0043226_0.504
|
IPR011701+83-473+|IPR036259+65-514_70-272_300-520+|IPR050382+73-525+
|
— |
PF07690+83-473+Major_Facilitator_Superfamily
|
G3DSA:1.20.1250.20:FF:000532+104-512+SLC_(SoLute_Carrier)_homolog
|
PTHR11662+73-525+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-557
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.833
|
60812.350
|
10.109
|
29.500
|
16.158
|
10.772
|
38.779
|
61.221
|
11.131
|
5.027
|
53.321
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
222.403
|
81.016
|
23.736
|
213.446
|
710.855
|
375.564
|
298.718
|
123.870
|
0.514
|
287.424
|
164.463
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.004
|
1.261
|
3.279
|
1.703
|
-0.908
|
— |
-1.708
|
1.412
|
-8.467
|
8.111
|
— | — | — |
No JSON data available for plots.