SCN Proteipedia

Hg_chrom8_TN10mRNA_16419

Organism: Heterodera glycines Gene Locus: chr8:8676613-8688352 Feature type: polypeptide

Protein Sequence

Length: 1,082

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.645	1.29	0.487	1.179	0.739	1.351	1.375	2.403	0.986	0.924	0.532	1.25	0.873	1.12	1.094	1.373	1.348	0.742	0.427	0.652	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15516	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.934

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	41-63	0.999	33-60	0.999	—	—	0.000	—	—	0.273	0.177	0.010	0.645	0.215	0.306	0.183	0.011	0.452	0.044

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012348	1.000	1.000	Hsc_gene_9326.t1	Hsc_gene_9326.t1	—	Q61UC4.2 Raf homolog serine/threonine-protein kinase [Caenorhabditis briggsae]	ADF45513.1 protein kinase MAP3K [Meloidogyne incognita]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468\|GO:0007165	GO:0008150_0.925\|GO:0005575_0.902\|GO:0110165_0.897\|GO:0009987_0.891\|GO:0003674_0.868\|GO:0065007_0.829\|GO:0050789_0.825\|GO:0050794_0.816\|GO:0050896_0.804\|GO:0005622_0.797\|GO:0051716_0.754\|GO:0003824_0.750\|GO:0140096_0.750\|GO:0016740_0.707\|GO:0007154_0.678\|GO:0023052_0.673\|GO:0016772_0.661\|GO:0016773_0.661\|GO:0016301_0.658\|GO:0007165_0.656\|GO:0004672_0.652\|GO:0008152_0.568\|GO:0044237_0.536\|GO:0004674_0.533\|GO:0032502_0.530\|GO:0048856_0.530\|GO:0016020_0.525\|GO:0048518_0.524\|GO:0005737_0.522\|GO:0043170_0.518\|GO:0048583_0.515\|GO:0035556_0.514\|GO:0048522_0.513\|GO:0005488_0.511\|GO:0010646_0.510\|GO:0023051_0.502	IPR000719+781-1047_781-1050+\|IPR001245+783-1040+\|IPR002219+141-188_142-188_142-189+\|IPR003116+56-132_58-119+\|IPR008271+898-910+\|IPR011009+770-1048+\|IPR017441+787-808+\|IPR029071+56-131+\|IPR046349+132-189+\|IPR050167+235-1044+	SM00109+142-188+\|SM00220+781-1047+\|SM00455+56-132+	PF00130+142-189+Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)\|PF02196+58-119+Raf-like_Ras-binding_domain\|PF07714+783-1040+Protein_tyrosine_and_serine/threonine_kinase	—	PTHR23257+235-1044+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-42;217-343;503-758;1061-1082	3.000	43-216;344-502;759-1060	8vyu_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.966	116263.240	8.472	45.000	20.795	10.721	49.445	50.555	13.678	7.116	57.301

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	2559.483	2910.685	1510.159	1229.561	1483.610	1425.946	2779.513	858.827	861.497	5977.254	3784.787

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.176	-1.380	-0.188	0.239	—	0.973	-0.837	1.837	—	—	—	—	—

No JSON data available for plots.

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