SCN Proteipedia

Hg_chrom8_TN10mRNA_16425

Organism: Heterodera glycines Gene Locus: chr8:8714267-8724967 Feature type: polypeptide

Protein Sequence

Length: 1,144

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.169	0.732	1.287	0.603	1.18	1.479	0.947	1.792	0.758	1.217	0.517	1.903	1.141	0.622	1.302	0.799	1.06	0.914	1.345	0.283	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15520	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	0.994

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RQRNKPKEPPKKPKA,KRGGSVHFGKAREVKK	—	—	—	—	—	—	0.000	—	—	0.619	0.024	0.009	0.347	0.116	0.079	0.075	0.001	0.059	0.034

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012351	1.000	1.000	Hsc_gene_9328.t1	Hsc_gene_9328.t1	—	Q8NI36.1 WD repeat-containing protein 36 [Homo sapiens]	KAI1725038.1 utp21 specific WD40 associated putative domain-containing protein [Ditylenchus destructor]	No	0.060

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0006364\|GO:0032040	GO:0005575_0.909\|GO:0110165_0.904\|GO:0005622_0.807\|GO:0016020_0.791\|GO:0008150_0.763\|GO:0043226_0.739\|GO:0043229_0.716\|GO:0009987_0.712\|GO:0043227_0.662\|GO:0043231_0.644\|GO:0032991_0.588\|GO:0043228_0.553\|GO:0043232_0.553\|GO:0005634_0.547\|GO:0071840_0.534\|GO:0031974_0.525\|GO:0043233_0.525\|GO:0070013_0.520\|GO:0031981_0.517\|GO:0140513_0.501	IPR001680+136-177_164-186_180-222_225-264_231-273_267-307_275-306_276-306_314-352_321-349_524-563_531-562_531-565_619-657_632-657_632-666_660-699+\|IPR007319+857-1140+\|IPR015943+7-701_17-324+\|IPR036322+64-266_196-698+	SM00320+136-177_180-222_225-264_267-307_314-352_524-563_619-657_660-699+	PF00400+276-306_321-349_531-562_632-657+WD_domain,_G-beta_repeat\|PF04192+857-1140+Utp21_specific_WD40_associated_putative_domain	—	PTHR22840+2-1142+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	473-529;720-1004	3.000	1-472;530-719;1005-1144	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.692	126662.240	5.157	-29.500	27.535	10.402	48.514	51.486	13.374	14.161	51.311

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	grey	1294.271	2116.162	1089.672	2212.463	2017.234	1408.749	1955.279	582.664	1154.666	528.102	796.629

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.188	—	1.131	-0.165	-0.503	0.483	-1.379	1.889	—	—	2.419	—	—

No JSON data available for plots.

Back to Browser