Hg_chrom8_TN10mRNA_16426
Organism: Heterodera glycines Gene Locus: chr8:8724755-8731022 Feature type: polypeptideProtein Sequence
Length: 674
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.277 | 0.966 | 0.782 | 1.228 | 1.088 | 1.446 | 0.724 | 1.929 | 0.89 | 1.544 | 0.495 | 1.309 | 0.989 | 0.685 | 1.181 | 1.06 | 0.608 | 0.719 | 0.913 | 1.178 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15521
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.684
|
0.146
|
0.014
|
0.572
|
0.090
|
0.106
|
0.114
|
0.048
|
0.076
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004851
|
2.000
|
1.000
|
Hsc_gene_9329.t1
|
Hsc_gene_2443.t1;Hsc_gene_2444.t1;Hsc_gene_2444.t2;Hsc_gene_6338.t1;Hsc_gene_9329.t1;Hsc_gene_9331.t1
|
— |
G5EG38.1 Cell division cycle protein 16 homolog [Caenorhabditis elegans]
|
KAI1725039.1 tetratricopeptide repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.809|GO:0005575_0.801|GO:0110165_0.800|GO:0009987_0.612|GO:0016020_0.555|GO:0005622_0.536
|
IPR011990+49-616_368-506_476-608+|IPR019734+194-227_376-409_378-406_410-443_412-437_444-477_561-594+
|
SM00028+194-227_376-409_410-443_444-477_561-594+
|
PF13181+378-406_412-437+Tetratricopeptide_repeat|PF13374+564-588+Tetratricopeptide_repeat
|
— |
PTHR12558+162-608+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;620-674
|
1.000
|
4-619
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.534
|
75200.390
|
6.556
|
1.000
|
23.739
|
12.611
|
44.659
|
55.341
|
12.908
|
10.831
|
48.516
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkorange
|
131.815
|
110.708
|
51.930
|
61.512
|
80.002
|
64.641
|
165.290
|
78.162
|
98.600
|
273.150
|
198.343
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.323
|
-0.985
|
0.354
|
0.349
|
— |
1.365
|
— |
1.224
|
— | — | — | — | — |
No JSON data available for plots.