Hg_chrom8_TN10mRNA_16429
Organism: Heterodera glycines Gene Locus: chr8:8737326-8741579 Feature type: polypeptideProtein Sequence
Length: 482
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.206 | 0.82 | 1.32 | 0.715 | 0.484 | 0.904 | 0.914 | 1.556 | 0.784 | 1.121 | 0.503 | 1.464 | 1.614 | 1.077 | 1.355 | 1.126 | 0.816 | 1.195 | 0.479 | 0.732 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15524
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
3-23
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.235
|
0.925
|
0.097
|
0.302
|
0.115
|
0.109
|
0.039
|
0.177
|
0.107
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012352
|
1.000
|
1.000
|
Hsc_gene_9334.t1
|
Hsc_gene_9334.t1
|
— |
Q9CZN8.1 Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial [Mus musculus]
|
KAI6174533.1 Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0006412|GO:0030956|GO:0050567
|
GO:0005575_0.755|GO:0110165_0.747|GO:0008150_0.683|GO:0005622_0.620|GO:0016020_0.603|GO:0005737_0.587|GO:0003674_0.586|GO:0043226_0.537|GO:0008152_0.532|GO:0009987_0.512|GO:0043229_0.508|GO:0043227_0.504
|
IPR000120+40-460+|IPR004412+1-465+|IPR020556+132-163+|IPR023631+45-454+|IPR036928+10-460_15-460+
|
— |
PF01425+45-454+Amidase
|
— |
PTHR11895+40-460+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
469-482
|
1.000
|
1-468
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
52560.650
|
7.312
|
6.500
|
23.237
|
12.033
|
43.154
|
56.846
|
13.071
|
10.166
|
57.261
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
541.959
|
407.881
|
311.332
|
396.977
|
545.062
|
484.802
|
950.484
|
311.510
|
89.988
|
1025.559
|
624.600
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.618
|
-0.176
|
0.458
|
0.426
|
— |
0.981
|
-0.746
|
1.753
|
-3.628
|
— | — | — | — |
No JSON data available for plots.