Hg_chrom8_TN10mRNA_16432
Organism: Heterodera glycines Gene Locus: chr8:8766832-8774939 Feature type: polypeptideProtein Sequence
Length: 893
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.612 | 1.198 | 0.998 | 1.506 | 1.027 | 1.206 | 0.853 | 1.288 | 1.344 | 0.984 | 1.052 | 0.922 | 1.618 | 1.055 | 1.463 | 0.912 | 0.789 | 0.526 | 1.12 | 0.79 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15527
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.379
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
KRQASPSIQGARKWTK,RKEACEKCFGTIRQKRQ,RRLTFTGRHNGDGGRRRWE
|
— | — |
8-35
|
0.998
|
1-21
|
0.856
|
0.924
|
0.000
|
0.000
|
0.373
|
0.243
|
0.056
|
0.284
|
0.143
|
0.038
|
0.080
|
0.070
|
0.282
|
0.583
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012354
|
1.000
|
1.000
|
Hsc_gene_9337.t1
|
— | — |
Q20958.4 Zinc metalloproteinase nas-29 [Caenorhabditis elegans]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.776|GO:0005575_0.613|GO:0110165_0.604|GO:0032501_0.547|GO:0003674_0.519
|
IPR000742+554-565+|IPR001506+340-530_350-530_374-392_424-442_443-460_480-495_516-529+|IPR006026+347-485+|IPR024079+306-532+
|
SM00235+347-485+
|
PF01400+350-530+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+315-594+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
867-893
|
1.000
|
1-866
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.872
|
101936.100
|
8.536
|
33.500
|
28.331
|
12.542
|
49.384
|
50.616
|
16.685
|
11.646
|
47.592
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
341.142
|
313.735
|
328.116
|
285.475
|
313.262
|
460.073
|
334.106
|
246.589
|
167.468
|
511.389
|
363.994
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.274
|
— | — |
0.569
|
-0.452
|
-1.005
|
0.580
|
— | — | — | — | — |