Hg_chrom8_TN10mRNA_16433
Organism: Heterodera glycines Gene Locus: chr8:8776275-8780724 Feature type: polypeptideProtein Sequence
Length: 426
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.392 | 0.655 | 0.768 | 0.324 | 0.665 | 1.565 | 0.671 | 0.822 | 1.043 | 2.062 | 0.213 | 0.967 | 1.695 | 1.083 | 1.389 | 0.905 | 0.847 | 0.925 | 1.445 | 0.483 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15528
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.722
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
48-68
|
0.966
|
— | — | — | — |
0.000
|
— | — |
0.146
|
0.131
|
0.009
|
0.196
|
0.760
|
0.191
|
0.624
|
0.011
|
0.080
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012355
|
1.000
|
1.000
|
Hsc_gene_9338.t1
|
Hsc_gene_9338.t1
|
— |
Q12893.1 Transmembrane protein 115 [Homo sapiens]
|
KAI1715529.1 eukaryotic integral membrane protein (DUF1751) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006890|GO:0016020
|
GO:0008150_0.964|GO:0005575_0.941|GO:0110165_0.941|GO:0009987_0.932|GO:0071944_0.920|GO:0016020_0.919|GO:0005886_0.915|GO:0051179_0.901|GO:0051234_0.892|GO:0006810_0.890|GO:0003674_0.866|GO:0005622_0.783|GO:0005488_0.772|GO:0043226_0.757|GO:0005515_0.744|GO:0043229_0.737|GO:0043227_0.728|GO:0005737_0.723|GO:0005773_0.714|GO:0043231_0.714|GO:0016192_0.691|GO:0012505_0.683|GO:0048193_0.677|GO:0006890_0.670|GO:0042802_0.669|GO:0031090_0.641|GO:0098588_0.597|GO:0031984_0.574|GO:0005794_0.573|GO:0005634_0.561|GO:0098791_0.556|GO:0000139_0.549|GO:0005795_0.540|GO:0031985_0.540|GO:0032580_0.540
|
IPR013861+18-326_59-152+|IPR035952+19-188+
|
SM01160+52-152+
|
PF08551+59-152+Eukaryotic_integral_membrane_protein_(DUF1751)
|
— |
PTHR13377+18-326+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
308-426
|
1.000
|
1-307
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.634
|
47129.610
|
7.415
|
3.500
|
18.075
|
11.268
|
38.498
|
61.502
|
9.859
|
8.216
|
48.826
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
483.448
|
519.475
|
458.623
|
549.196
|
813.490
|
941.740
|
815.112
|
454.553
|
446.357
|
73.247
|
233.151
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.410
|
— |
0.369
|
0.535
|
0.226
|
— |
-1.156
|
0.984
|
— | — |
3.603
|
— | — |
No JSON data available for plots.