Hg_chrom8_TN10mRNA_16435
Organism: Heterodera glycines Gene Locus: chr8:8786100-8791802 Feature type: polypeptideProtein Sequence
Length: 698
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.349 | 0.966 | 0.938 | 1.136 | 1.17 | 1.286 | 0.614 | 1.791 | 0.923 | 1.684 | 0.63 | 1.348 | 1.074 | 0.606 | 0.906 | 0.941 | 0.658 | 0.76 | 0.771 | 1.138 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15530
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.920
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.672
|
0.156
|
0.017
|
0.552
|
0.137
|
0.213
|
0.149
|
0.098
|
0.091
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004851
|
2.000
|
1.000
|
Hsc_gene_9329.t1
|
Hsc_gene_2443.t1;Hsc_gene_2444.t1;Hsc_gene_2444.t2;Hsc_gene_6338.t1;Hsc_gene_9329.t1;Hsc_gene_9331.t1
|
— |
G5EG38.1 Cell division cycle protein 16 homolog [Caenorhabditis elegans]
|
KAI1725039.1 tetratricopeptide repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.810|GO:0005575_0.798|GO:0110165_0.794|GO:0009987_0.615|GO:0016020_0.571|GO:0005622_0.564
|
IPR011990+49-664_324-608+|IPR019734+194-227_375-408_377-405_409-442_411-436_443-476_560-593+
|
SM00028+194-227_375-408_409-442_443-476_560-593+
|
PF13181+377-405_411-436+Tetratricopeptide_repeat|PF13374+563-587+Tetratricopeptide_repeat
|
— |
PTHR12558+162-657+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-698
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.671
|
77803.610
|
5.542
|
-12.500
|
24.355
|
12.321
|
44.126
|
55.874
|
12.178
|
12.178
|
48.138
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkorange
|
814.696
|
565.693
|
323.210
|
374.017
|
493.777
|
447.445
|
640.601
|
304.497
|
207.356
|
2227.812
|
1361.903
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.036
|
-0.734
|
0.319
|
0.369
|
— |
0.528
|
-0.660
|
1.215
|
— | — | — | — | — |
No JSON data available for plots.