Hg_chrom8_TN10mRNA_16442
Organism: Heterodera glycines Gene Locus: chr8:8808253-8809982 Feature type: polypeptideProtein Sequence
Length: 331
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.878 | 0.843 | 1.263 | 0.625 | 1.007 | 1.162 | 0.899 | 0.604 | 1.276 | 1.061 | 1.007 | 1.599 | 1.762 | 0.639 | 0.925 | 0.734 | 1.04 | 1.556 | 0.697 | 0.267 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15537
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.593
|
0.148
|
0.072
|
0.545
|
0.081
|
0.052
|
0.072
|
0.041
|
0.178
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001442
|
4.000
|
1.000
|
Hsc_gene_22336.t1
|
Hsc_gene_22341.t1;Hsc_gene_22342.t1
|
— |
P29691.4 Elongation factor 2 [Caenorhabditis elegans]
|
KAF7639314.1 Tr-type G domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0008150_0.795|GO:0005575_0.761|GO:0110165_0.761|GO:0009987_0.656|GO:0005622_0.616|GO:0005737_0.583|GO:0003674_0.578
|
IPR000795+1-331_2-112_133-268+|IPR027417+1-113_2-111_114-277_131-325+
|
— |
PF00009+2-112_133-268+Elongation_factor_Tu_GTP_binding_domain
|
G3DSA:3.40.50.300:FF:000058+112-277+Translation_elongation_factor_2
|
PTHR42908+132-319+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-331
|
8hl4_AEFG
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.521
|
36525.990
|
5.269
|
-4.000
|
25.378
|
9.366
|
45.015
|
54.985
|
12.387
|
12.991
|
52.568
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
brown
|
90.992
|
35.787
|
71.674
|
77.242
|
113.012
|
94.356
|
231.538
|
70.766
|
113.007
|
52.943
|
78.685
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.769
|
0.973
|
— |
0.518
|
— |
1.307
|
-0.520
|
1.855
|
— | — | — | — | — |
No JSON data available for plots.