Hg_chrom8_TN10mRNA_16443
Organism: Heterodera glycines Gene Locus: chr8:8813973-8830147 Feature type: polypeptideProtein Sequence
Length: 2,060
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.174 | 1.072 | 0.989 | 1.071 | 1.141 | 1.668 | 0.74 | 1.529 | 0.841 | 0.925 | 0.625 | 1.199 | 0.89 | 0.831 | 1.407 | 1.089 | 1.074 | 0.846 | 1.046 | 0.528 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15538
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.783
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRS,PKKGAAAAGGGGKIRGRRSKQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.827
|
0.061
|
0.015
|
0.326
|
0.034
|
0.019
|
0.046
|
0.007
|
0.078
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012359
|
1.000
|
1.000
|
Hsc_gene_22360.t1
|
— | — |
Q61T02.2 Lysine-specific demethylase rbr-2 [Caenorhabditis briggsae]
|
KAI1715590.1 jmjC domain, hydroxylase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
GO:0008150_0.971|GO:0009987_0.890|GO:0003674_0.840|GO:0005575_0.834|GO:0110165_0.827|GO:0065007_0.786|GO:0016043_0.780|GO:0071840_0.780|GO:0050789_0.770|GO:0005622_0.744|GO:0016020_0.718|GO:0050794_0.710|GO:0043226_0.683|GO:0003824_0.673|GO:0140096_0.670|GO:0043229_0.659|GO:0006325_0.649|GO:0006338_0.649|GO:0140993_0.626|GO:0032451_0.611|GO:0032452_0.611|GO:0140457_0.611|GO:0141052_0.599|GO:0043227_0.596|GO:0008152_0.582|GO:0005488_0.576|GO:0043170_0.575|GO:0043231_0.566|GO:0019222_0.563|GO:0044237_0.561|GO:0009058_0.549|GO:0031323_0.549|GO:0060255_0.546|GO:0005634_0.543|GO:0009059_0.537|GO:0044249_0.537|GO:0032453_0.527|GO:0010467_0.526|GO:0009889_0.514|GO:0031326_0.514|GO:0010556_0.513|GO:0010468_0.511|GO:0044238_0.503
|
IPR001606+66-155_67-156_72-151+|IPR001965+357-403_1529-1619_1928-1979+|IPR003347+504-670_537-653+|IPR003349+1-42+|IPR004198+743-792+|IPR011011+352-405_1932-1981+|IPR013083+1926-1986+|IPR013637+879-1360+|IPR019787+355-405_358-402+|IPR036431+44-174_49-166+|IPR048615+657-710+
|
SM00249+357-403_1529-1619_1928-1979+|SM00501+67-156+|SM00558+504-670+|SM01014+63-151+
|
PF00628+358-402+PHD-finger|PF01388+72-151+ARID/BRIGHT_DNA_binding_domain|PF02373+537-653+JmjC_domain,_hydroxylase|PF02928+743-792+C5HC2_zinc_finger|PF08429+879-1360+PLU-1-like_protein|PF21323+657-710+Lysine-specific_demethylase_5,_C-terminal_helical_domain
|
— |
PTHR10694+17-1130+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
147-345;815-890;1052-1216;1424-1574;1748-1928;1991-2060
|
6.000
|
1-146;346-814;891-1051;1217-1423;1575-1747;1929-1990
|
5v9t_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.632
|
228145.060
|
6.642
|
5.500
|
26.359
|
9.417
|
51.650
|
48.350
|
14.078
|
12.282
|
53.544
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
2786.440
|
3362.383
|
1637.366
|
1438.450
|
1139.017
|
1643.113
|
1818.728
|
927.415
|
2848.331
|
5566.999
|
4401.856
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.268
|
-1.362
|
— |
-0.368
|
0.543
|
— |
-0.930
|
1.113
|
— | — | — | — | — |
No JSON data available for plots.